Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0549 ATGTCTTCTCTCGTTGACTGGTCAACACCAACTTCCGAGGAACCAAACCGACGTCGTTCTTTCTTTCCGAAAATTTCCCTCCCTGAAAGTTCCGAGGCGTTCAGGAGAAAGGTTTTCTTCAACTATGAGAAGCGCATGCGGTTACGAAGCCCTCCGGAAAAGGTTTTTGAGTATTTTGCATCTGATCGTAGTCCAGAAGGCGAAGTGCTGATGAAACCAGCAGACCTAATGCGAGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGAAGGAGAAAGGAGTCCAGGCCATTTACGTTGCCCTCCTTCtgaattttttatgctttttgatGTAAACAATGACggtcttatatcttttaaagaGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCAGTGGCATTTAAAATGTTCGATGTTGACAATAATGGGGAGATAAATAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTTGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAGATGGAGGGCTGGTAGAATACTTTTTTGATAAAGATGGAAATGGATGCCTCCAGCAtgataaatttgtaaaatttttgagaGACTTACATGATGAGATTCTGAGGCTGGAGTTTGCACATTATGACTACAAATCTCGACAAACCATATCAGCCAAGGACTTTGCACTTTCCATGGTTGCTTCTGCTGACATGAATCATCTAGGCAGGTTGCTTGAACAGGTTGATGAATTGAACAATGATGCACACTTTAAGGATGTACGTATCACATTTGAGGAGTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTATTACCATTTTCATTGGCCCTCTTcagttttggaaaagtaaatgGCCTGTTGACAAGAGACGATTTTCAGCGAGCAGCATTGCATGTATGCGGCGTATCTCTCTCGGACAATGTGGTTGACATTGTTTTCCATTTGTTTGACACAAATCGGGATGGAAACCTAAGTTTTGATGAGTTTGTCAGAGTGCTACACAAACGTGAAAGGGACATTGCACAACCCTTGGAGACAGGAATACTGGGTTTGTTGTCTTGCTGCTGGAACTGTAGGAATAACTTCCCATCTCCATGGTTGTTTTCCTGA 1197 0.406 MSSLVDWSTPTSEEPNRRRSFFPKISLPESSEAFRRKVFFNYEKRMRLRSPPEKVFEYFASDRSPEGEVLMKPADLMRAVVPVFPPSESHLVRDGYLEGERSPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEINKEEFKKVMALMRSCHRQGVHHRDGLRTGLKVNDSVEDGGLVEYFFDKDGNGCLQHDKFVKFLRDLHDEILRLEFAHYDYKSRQTISAKDFALSMVASADMNHLGRLLEQVDELNNDAHFKDVRITFEEFKNFAELRKKLLPFSLALFSFGKVNGLLTRDDFQRAALHVCGVSLSDNVVDIVFHLFDTNRDGNLSFDEFVRVLHKRERDIAQPLETGILGLLSCCWNCRNNFPSPWLFS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0549 398 CDD EFh 112 169 IPR002048 GO:0005509
Ssu5g0549 398 Gene3D - 177 307 - -
Ssu5g0549 398 SUPERFAMILY EF-hand 112 364 IPR011992 -
Ssu5g0549 398 SUPERFAMILY EF-hand 204 362 IPR011992 -
Ssu5g0549 398 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 2 397 - -
Ssu5g0549 398 Pfam EF hand 113 130 IPR002048 GO:0005509
Ssu5g0549 398 Gene3D - 312 369 - -
Ssu5g0549 398 Pfam EF-hand domain pair 314 363 IPR002048 GO:0005509
Ssu5g0549 398 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Ssu5g0549 398 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Ssu5g0549 398 Gene3D - 26 176 - -
Ssu5g0549 398 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Ssu5g0549 398 Pfam EF hand 147 170 IPR002048 GO:0005509
Ssu5g0549 398 SMART efh_1 143 171 IPR002048 GO:0005509
Ssu5g0549 398 SMART efh_1 337 365 IPR002048 GO:0005509
Ssu5g0549 398 SMART efh_1 109 137 IPR002048 GO:0005509
Ssu5g0549 398 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Ssu5g0549 398 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 2 397 IPR039800 GO:0005509|GO:0006851
Ssu5g0549 398 CDD EFh_MICU 144 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0549 Ssu-Chr5 12065602 12074750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0549 3 325 EF-hand Containing Proteins AT4G32060 71.171 2.62e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0549 K22827 - gmx:100806575 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0549 5 12065602 12074750 Ssu1g3483 1 89157691 89161000 PCT