Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3483 ATGTCTTCCTTTTCCACTCTCAGGAGATTCTCGCTGTTCACCCAACACTTCCGTACCCTTCATTCTTCCACTTCCCAATCTTCCTCCTCTCCCAACCCAAATCGCAATCCGAAGTGGGGTTCAGCCATTGTTGTAGCCTCTGCTCTTGCCCTTTTGTATTGCTTCACCACACCCCATGAACACTTCGACTCCACTTTCTTAAACGATGCCCCTCGCAGTTCTTCACCGCCGTTGTTTGGAAAACCATCCCTTCCAGAATGTACTGATCATGGCTTGCTTTTTGGAGATGCGTACAGAAGTAAGGTTTTCTTCAACTATGAGAAGCGTCTACGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCCAGAAGGAGAACTACTCATGAAGCCGGTGGACCTAATGCGAGCAGTTGTTCCTATTTTCCCTCCATCAGAATCCAACCTTGTAAGAGAGGGATACTTGAAAAGTGAAAGAAGTCTTCCTGGCCATTTATGCTGTCCCCCTTCggaattttttatgctttttgatGTAAACAACGACGAACTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTGCTTAGCATCCCAGAATCAAGCTTTTCTGCAGCATTTAAAATGTTCGACAAGGATAATGATGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCACTACAGGGATGGACAACGAATTGGCCGAAAGGCCAATGCTTCTGTAGAAAATGGAGGCCTGGTGGAACACTTATTTGGTAAAGATGGAAAGGGACGCCTCAGACATGATAAATTCGTGCAGTTTATAAGAGGTTTGCATGATGAAATTTTGAGGCTGGAGTTTGCTCATTATGATTACAAGTCTCGAAAAACTATATCGGCCAAGGACTTTGCACACTCCATAGTTGCTTCTGCTGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCATGGTTTAGGGATGTACGCATAACATTTGAGGAGTTCAAAAATTTTGCAGAGCTGCGGAAAAAATTAGCACCATTTTCATTGGCCCTTTTCAGTTTTGCAGAAGTACAAGGCCTGTTAACTAGAGATGATTTTCAGCGAGCTGCGTCACATGTTTGTGATTTATCTCTCTCTGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACTCAAATGGGGATGGAAACCTAAGTACGGACGAGTTTGTTAAAGTACTACAGCGTCGAGAAAGAGACATTGGTCGACCTATGTACACAGGAGTCCTGGGTTTCTTGTCATGCTGCTGGAACTGTACGAACACCTCCCCATCTTGGTTGTTTTCCTGA 1389 0.4291 MSSFSTLRRFSLFTQHFRTLHSSTSQSSSSPNPNRNPKWGSAIVVASALALLYCFTTPHEHFDSTFLNDAPRSSSPPLFGKPSLPECTDHGLLFGDAYRSKVFFNYEKRLRLHSPPEKVFEYFASCRTPEGELLMKPVDLMRAVVPIFPPSESNLVREGYLKSERSLPGHLCCPPSEFFMLFDVNNDELISFKEYIFFVTLLSIPESSFSAAFKMFDKDNDGEIDKEEFKKVMQSMRSHTRQGVHYRDGQRIGRKANASVENGGLVEHLFGKDGKGRLRHDKFVQFIRGLHDEILRLEFAHYDYKSRKTISAKDFAHSIVASADLSHLGRLLERVDELSNDPWFRDVRITFEEFKNFAELRKKLAPFSLALFSFAEVQGLLTRDDFQRAASHVCDLSLSDNVVEIVFHLFDSNGDGNLSTDEFVKVLQRRERDIGRPMYTGVLGFLSCCWNCTNTSPSWLFS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3483 462 Gene3D - 264 374 - -
Ssu1g3483 462 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Ssu1g3483 462 SMART efh_1 174 202 IPR002048 GO:0005509
Ssu1g3483 462 SMART efh_1 208 236 IPR002048 GO:0005509
Ssu1g3483 462 SMART efh_1 402 430 IPR002048 GO:0005509
Ssu1g3483 462 SUPERFAMILY EF-hand 295 429 IPR011992 -
Ssu1g3483 462 Gene3D - 115 263 - -
Ssu1g3483 462 Gene3D - 378 436 - -
Ssu1g3483 462 Pfam EF-hand domain pair 379 430 IPR002048 GO:0005509
Ssu1g3483 462 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Ssu1g3483 462 CDD EFh_MICU 209 430 - -
Ssu1g3483 462 ProSitePatterns EF-hand calcium-binding domain. 217 229 IPR018247 -
Ssu1g3483 462 Pfam EF hand 210 236 IPR002048 GO:0005509
Ssu1g3483 462 CDD EFh 177 234 IPR002048 GO:0005509
Ssu1g3483 462 SUPERFAMILY EF-hand 177 293 IPR011992 -
Ssu1g3483 462 ProSiteProfiles EF-hand calcium-binding domain profile. 204 239 IPR002048 GO:0005509
Ssu1g3483 462 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 458 - -
Ssu1g3483 462 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 458 IPR039800 GO:0005509|GO:0006851
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3483 Ssu-Chr1 89157691 89161000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3483 38 392 EF-hand Containing Proteins AT4G32060 62.097 6.41e-154 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3483 K22827 - gmx:100786375 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0549 5 12065602 12074750 Ssu1g3483 1 89157691 89161000 PCT