Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0528 atgttctttctctcttccaCCTCCTCGACCCTTTACTCCTGTTTCGGCGTTTCCCAACCTGCCCACAACCCGCCGCTCTCCCCGAACCCAAACCTCACCACCTACACCTACCACACCGAATACGGCACCGTTTCGCTGACATGGTCACGCTCCATGCTGGGTCGCTCCCTCCACGTACACCTCCACAACCACTCCTCCTTCCACCTCCACCTCAAACCGTGGAAAAAGAAGCACGGTTCGAAAAAACTCTCCCACAACACCCTCTTCCTCTGGAACCTCTCCAACGCGAGGTTCGGGTCCGGGCCCGAACCTCGCTCGAGGTTCTACCTCGCCCTAGTGGTCGACCACAACCTTAACCTCCTCGTTGGGGACCTATTCCCGAAGCTCAAGGCCCAAAAGCCCAGCAAAGCCCCCCAACAACTCCTCGTCCTCAAGCGCGACCACGTCCACGTGGCGCCACAGCGTAAGAGAGTGTACCAAACGAAAACAAAGCTCGGAGGTAAGGTTAGAGAAATCGAAATAGATTGCGACAGCGGCAACGGTTACGAGAACGACGGCTTCAGGCTTTCATTCGGCGTGGACGGGGAGAAGGTTCTGGAAGTGACGCGACTGAAGTGGAAGTTCAGAGGGAGCGAGCGTGTGGAGGTCGACGGGGTGCACGTGCAGATCTCGTGGGACGTGCACGACTGGCTCTTCGAGAAGGATAAGGATGGTAGAAGCAATAGCGGGAACGGTGGTAACAACGAGGGACACGCGGTTTTCATGTTTAAGTTCGAGGAGGATCATGAGGTACGAGGTAAGGAGGTGCAGAGTGTGTGGTCGAGTAAGCAACAGTGGAGTTTCGGGTGTGGCGAGTGGGGGAGGAATAATGGGAAGAGTTGGTCGTCTTCGTCTTTGTCGGTGTCTTCTTCTGCTGGGTCCTTTGGAGGGAGTTCGTCTGTGATGGAATGGTCAAGTGTGGAGGAGAATGACTTGGTGGTTCCTCTTGGGTTTTCTTTGGTTGTTTATGCTTGGAGAAGATGA 1023 0.5445 MFFLSSTSSTLYSCFGVSQPAHNPPLSPNPNLTTYTYHTEYGTVSLTWSRSMLGRSLHVHLHNHSSFHLHLKPWKKKHGSKKLSHNTLFLWNLSNARFGSGPEPRSRFYLALVVDHNLNLLVGDLFPKLKAQKPSKAPQQLLVLKRDHVHVAPQRKRVYQTKTKLGGKVREIEIDCDSGNGYENDGFRLSFGVDGEKVLEVTRLKWKFRGSERVEVDGVHVQISWDVHDWLFEKDKDGRSNSGNGGNNEGHAVFMFKFEEDHEVRGKEVQSVWSSKQQWSFGCGEWGRNNGKSWSSSSLSVSSSAGSFGGSSSVMEWSSVEENDLVVPLGFSLVVYAWRR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0528 340 Pfam Plant protein of unknown function (DUF868) 30 339 IPR008586 -
Ssu5g0528 340 PANTHER OS08G0422401 PROTEIN 10 339 - -
Ssu5g0528 340 PANTHER EXPRESSED PROTEIN 10 339 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0528 Ssu-Chr5 11496143 11497165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0528 13 263 EF-hand Containing Proteins AT5G28150 34.672 1.68e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0528 - - gmx:100806546 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0528 5 11496143 11497165 Ssu1g3506 1 89644956 89646080 PCT