Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3506 ATGCAACTAGCCAGCCAAAGGGTCAGACACAGAGACAGGGTCTTCCTttccttccccccccccccatccATAAAAGCAACCCTTTCTTCCTCTTCCCCAAACCTCAAAAACAAAACCCTCAAACAAGCCACAACAACAATGTCATCATCCCCCTTTCCTTCATGCTTCCGCCCCTCCCCAACCACCGACGCCCACCCGCCCCCTCCCCCTCCTctgccgccgccgccgccgcacTCCACGATCTCCAACCTGACCCTCTACCACACCGAGGCGGGCCCCGTGTCCCTGACGTGGTCGCGCTCCATCGTGGGCCGCTCCCTCCACATTCAGCTCCACCCCTTCGACTCCCCTCCCTTCCTCTCCTTCCACCTCCATATCCGGCCCTTCCTCTTCTGGAAAAAACACGGCGCCAAGAGACTCGCCTCCGACACCCACCTCTTCTGGAACCTCTCCAAGGCCAGGTTCGGGCCGGGCCCCGAGCCAGTGTCCGGCTTCTACGTCGCCCTCGTCGTCCGCGACCACATGACCCTCCTCATCGGGGACGCCGCCAAAGACGCGTATTCCAAGTCCAGGGCCCGCGAGCCCAAGACCCGGCAATTCCTCCTCCTCAAAAAAGAGCACGTGCTCGCCGACAGAGTGTACTCCACGCGCGCCACGTTCGGCGGGAAGGCGCGTGAGATTCAGATCGACTGCGGGTACAGGGACCACTCGCGGCTGTGCTTCAGCGTCGACGGGGAGAAGGTGCTGCAGATTAAGCGCCTCAAGTGGAAGTTCAGGGGGAACGAGCGAGTCCAGGTGGACGGGGTGCACGTGCAAATCTCGTGGGACCTTTACAACTGGCTCTTCGACAAGGACAACGGCGACGCGCACGCCATTTTCATGTTCAAGTtcgaggaggaggaggaagaagaagaagcggCTGGGGACAGGAACTTGGTGGGGCTGTGGAATTTGGGGGTTTGCGAGTGGGGCAAAGTGGGGAAGAGTTGGTCCTCTTCGTCGGTGTCGTCTTCGGCTGGGTCCTTCGGTGGAAGCTCCTCCGTCTTGGAGTGGTCCAGTGTGGAGGAGAATGAGTTGGTCGTTCCCGTTGGGTTTTCTTTGCTCGTTTATGCTTCGAAACGCTGA 1125 0.5591 MQLASQRVRHRDRVFLSFPPPPSIKATLSSSSPNLKNKTLKQATTTMSSSPFPSCFRPSPTTDAHPPPPPPLPPPPPHSTISNLTLYHTEAGPVSLTWSRSIVGRSLHIQLHPFDSPPFLSFHLHIRPFLFWKKHGAKRLASDTHLFWNLSKARFGPGPEPVSGFYVALVVRDHMTLLIGDAAKDAYSKSRAREPKTRQFLLLKKEHVLADRVYSTRATFGGKAREIQIDCGYRDHSRLCFSVDGEKVLQIKRLKWKFRGNERVQVDGVHVQISWDLYNWLFDKDNGDAHAIFMFKFEEEEEEEEAAGDRNLVGLWNLGVCEWGKVGKSWSSSSVSSSAGSFGGSSSVLEWSSVEENELVVPVGFSLLVYASKR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3506 374 MobiDBLite consensus disorder prediction 23 57 - -
Ssu1g3506 374 Pfam Plant protein of unknown function (DUF868) 92 373 IPR008586 -
Ssu1g3506 374 PANTHER EXPRESSED PROTEIN 47 372 IPR008586 -
Ssu1g3506 374 PANTHER OS08G0422401 PROTEIN 47 372 - -
Ssu1g3506 374 MobiDBLite consensus disorder prediction 1 79 - -
Ssu1g3506 374 SUPERFAMILY Formin homology 2 domain (FH2 domain) 66 150 - -
Ssu1g3506 374 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3506 Ssu-Chr1 89644956 89646080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3506 94 303 EF-hand Containing Proteins AT5G28150 37.037 7.85e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3506 - - gmx:100783731 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0528 5 11496143 11497165 Ssu1g3506 1 89644956 89646080 PCT