Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0527 ATGTTGTGTAATCTGGTTCCGGTGCCACGCAAGAAAAAACCCGGTTCGAACCCGGTTTGCCTTAACGTCTACGACCTAACCCCAATTAACGGCTACGCTTATTGGCTTGGCCTCGGAGTTTACCATTCTGGTGTTCAAGTTCATGGGGTTGAATATGGATTTGGGGCGCATGAACGCGACACGACTGGGATTTTTGAAGTGGAGCCTAGACACTGTCCTGGATTCACCTTCAGGAAATCGATTTTCATTGGATGGACGGAGATGGGACCGAAGGATGTTCGCGCGTTTATGGAGGGGCTGGCTCAAGAGTATTCTGGGAACACCTACCACCTTATCCAGAAAAACTGCAACCACTTCTGCAATGATGTTTGTCTCAAGTTAACGGGAAAGTCTATCCCCCGATGGGTGAATCGACTTGCTAGACTTGGTTTTCTCTGCAACTGTGTTCTTCCACCCAGCCTAAACGAAACAAAGGTTCGCCAAGTTACATTAGACAGGGTTCAAgaaggagagaagaagaaaatgagaagcCAGTCCAGCAGGTACGAGGCTTCACCCAATCCTCCATTGTCTAGTAGCCAAAGACATTGCCTTCCTCCATCTTCTTCTGTAATTAATGCTTCTCCGTCCTCAACCTTAACAGTAAAGTAA 651 0.4562 MLCNLVPVPRKKKPGSNPVCLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHERDTTGIFEVEPRHCPGFTFRKSIFIGWTEMGPKDVRAFMEGLAQEYSGNTYHLIQKNCNHFCNDVCLKLTGKSIPRWVNRLARLGFLCNCVLPPSLNETKVRQVTLDRVQEGEKKKMRSQSSRYEASPNPPLSSSQRHCLPPSSSVINASPSSTLTVK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0527 216 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Ssu5g0527 216 Gene3D PPPDE domains 12 173 IPR042266 -
Ssu5g0527 216 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Ssu5g0527 216 MobiDBLite consensus disorder prediction 180 216 - -
Ssu5g0527 216 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Ssu5g0527 216 PANTHER DESUMOYLATING ISOPEPTIDASE 2 214 IPR008580 GO:0008233
Ssu5g0527 216 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 214 - -
Ssu5g0527 216 MobiDBLite consensus disorder prediction 166 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0527 Ssu-Chr5 11474549 11476367 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0527 K22763 - gmx:100786432 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0527 5 11474549 11476367 Ssu1g3507 1 89660997 89662951 PCT