Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3507 ATGCTGCGCAAGCTGGTATCAGGGCCACGCAAGAACAAGCCTGGCACCGTCCCCGTTCACCTCAACGTCTATGATCTCACCACAATTAATGGCTATGCCTATTGGCTTGGCCTTGGAGTCTACCATTCTGGGGTTCAAGTTCATGGAGTTGAATATGGTTTTGGTGCTCATGAACATGACACAACGGGGATTTTTGAAGTGCAACCGAAACACTGTCCTGGGTTCACTTTCAGAAAATCAGTTTTCATTGGAACAACAGATCTGGGTCCGAAAGACGTTCGGGCGTTCATGGAGAAACTGGCTCAAGAGTACTCTGGCAACACCTACCATCTCATCTCGAAAAATTGCAACCACTTTTGTAATGATGTTTGTCTCAAATTAACGGGAAAGTCAATCCCTCGATGGGTCAACCGACTTGCTCGACTTGGTCTTCTGTGCAACTGTGTTCTCCCCCCTGGCCTAAATGACACAAAGGTTCCACAAGTTACATCAGACAGGGCCCAAGAAGGAGAAAAGAGGAAAATGAGAAGTCAGTCCTGCAGGTACGAGGGTTCCTCCAATCCCTCATTGTCTCGAGGTTCAGCAATTAAAAGTAGTAGCCAAAGACATTGCCTTCCTCCATCTTCATCTTTGATTAATGCTTCTTCAGCCTCAACCTTAACAGTGAAGTGA 672 0.4658 MLRKLVSGPRKNKPGTVPVHLNVYDLTTINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHDTTGIFEVQPKHCPGFTFRKSVFIGTTDLGPKDVRAFMEKLAQEYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVPQVTSDRAQEGEKRKMRSQSCRYEGSSNPSLSRGSAIKSSSQRHCLPPSSSLINASSASTLTVK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3507 223 Gene3D PPPDE domains 12 169 IPR042266 -
Ssu1g3507 223 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 221 - -
Ssu1g3507 223 MobiDBLite consensus disorder prediction 165 179 - -
Ssu1g3507 223 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Ssu1g3507 223 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Ssu1g3507 223 MobiDBLite consensus disorder prediction 180 223 - -
Ssu1g3507 223 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
Ssu1g3507 223 MobiDBLite consensus disorder prediction 159 223 - -
Ssu1g3507 223 PANTHER DESUMOYLATING ISOPEPTIDASE 2 221 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3507 Ssu-Chr1 89660997 89662951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3507 K22763 - gmx:100306675 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0527 5 11474549 11476367 Ssu1g3507 1 89660997 89662951 PCT