Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0483 ATGGACGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTGAAGCAGAAAGGGTTTACGCAAAACGAGGACCAACTTCAACTCACCAACACCGATTCCTCTCTCCAACCCGACACTCTCAATCGCACTcaATTGGAAAGAGGTTCTGCAAGATACCATGATGGATATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGTTGCTGCGTGTGCTTTATCCAGTATTTATCCATTGCTTCATGTATCTTGTGGCAAAAGGGCAACTTCAGGAagCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATACACTCGCGAGACCTTCAAAAATTGGAGCTAGTTCTTTCTCCTACTCATTTGGAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTTCTGTTGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCATATTAGTTTCCAAGTTACAACTGGACAACCTAGCTCAATTTCTGATGATCCAGAAGCTGTTACCCTCACTGGAAGCATCCAGGATGCAGCAAACCAGATAAATCAGAAAGAAATACTTTGGGGGATGTTTGAAGACTCTGTAGAAGACCACATAGATAAGGCTGGGGCCTTGCTTTCAGACACAGAAAAGGGCGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGAGTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTtcaataaaaaaggtaaaaaaggaaaaggccAGTAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTATATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACAGTTTCAACTGATGTAGAACTGTCTATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCCCTCCCTTCAGTTAACTTCTACACATTTGTAAATACGCATAATGGTTTAAGCTGTTCATCAATATCCCACGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCGCTAAAGGTCTGGGATATGGCGAAACTTGAACAACAACCCACCACTTCTTTTTGGCAGGGAGGGAATGACACATCACAAAATGAACAACTTTTTGGGCAAAATAGTGGGAAAAAACAGTACACATTGTTTCAAGGTCATTCAGGCCCAGTCTATGGAGCCACTTTTAGTCCTGCTGGggattttattctttcttcttcagcAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCCAGCTGTTCACATGACAGAACAGCTAGGATTTGGACCATGGACAGAATACAACCTTTAAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGCCAACTGCAACTACATTGCTACCGGCTCCAGTGACAAAACAGTTCGACTATGGAATGTGCAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTGTCTTTGGCAATGTCTCCAGATGGTCGCTACATGGCATCTGGTGACGAAGATGGCACAATCATGATGTGGGACCTCTCCAGTGGCTGTTGTGTCACACCTCTAGTCGGTCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCCGATTGCACTGTCAAATTTTGGGATGTAACTACAGGCATAAAGGTTCCGAGGAATGAAGAAAATAGAAGTGGGAATACTAACAGACACAGATCATTGAAAAGCTTGCCAACTAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGAAGGAATCTTCTTTTTGCAGCTGGAGCTCTTGCAAAAAGTGGCTGA 1977 0.4183 MDEDQIEGCVSGYLKQKGFTQNEDQLQLTNTDSSLQPDTLNRTQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLYPVFIHCFMYLVAKGQLQEAWNFFNTFREDHEMIHSRDLQKLELVLSPTHLEEMEFAHSLRQSKFNIKICGYSYELLLQHLHSMQSTTIIGIINEHISFQVTTGQPSSISDDPEAVTLTGSIQDAANQINQKEILWGMFEDSVEDHIDKAGALLSDTEKGEGEGKEGENDESKKRSIDGGKQGSSIKKVKKEKASSATGKNAKPEANTISAAPRIKPELPLPTVSTDVELSILEDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLEQQPTTSFWQGGNDTSQNEQLFGQNSGKKQYTLFQGHSGPVYGATFSPAGDFILSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWTMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWNVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEENRSGNTNRHRSLKSLPTKSASVYSLQFSRRNLLFAAGALAKSG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Ssu5g0483 658 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 657 IPR037783 -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Ssu5g0483 658 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Ssu5g0483 658 PRINTS G protein beta WD-40 repeat signature 506 520 IPR020472 -
Ssu5g0483 658 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Ssu5g0483 658 CDD TAF5_NTD2 52 180 IPR007582 -
Ssu5g0483 658 Pfam WD domain, G-beta repeat 335 365 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD domain, G-beta repeat 442 476 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD domain, G-beta repeat 397 435 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD domain, G-beta repeat 565 603 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD domain, G-beta repeat 523 561 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD domain, G-beta repeat 482 519 IPR001680 GO:0005515
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Ssu5g0483 658 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Ssu5g0483 658 Gene3D TFIID subunit TAF5, NTD2 domain 29 180 IPR037264 -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Ssu5g0483 658 Gene3D - 483 563 IPR015943 GO:0005515
Ssu5g0483 658 Gene3D - 564 657 IPR015943 GO:0005515
Ssu5g0483 658 MobiDBLite consensus disorder prediction 231 276 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 524 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 565 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Ssu5g0483 658 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Ssu5g0483 658 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Ssu5g0483 658 CDD WD40 338 654 - -
Ssu5g0483 658 Gene3D - 230 482 IPR015943 GO:0005515
Ssu5g0483 658 ProSitePatterns Trp-Asp (WD) repeats signature. 590 604 IPR019775 -
Ssu5g0483 658 SMART WD40_4 395 435 IPR001680 GO:0005515
Ssu5g0483 658 SMART WD40_4 326 365 IPR001680 GO:0005515
Ssu5g0483 658 SMART WD40_4 522 561 IPR001680 GO:0005515
Ssu5g0483 658 SMART WD40_4 438 477 IPR001680 GO:0005515
Ssu5g0483 658 SMART WD40_4 564 603 IPR001680 GO:0005515
Ssu5g0483 658 SMART WD40_4 480 519 IPR001680 GO:0005515
Ssu5g0483 658 MobiDBLite consensus disorder prediction 231 289 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Ssu5g0483 658 PANTHER CANNONBALL-RELATED 1 657 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 607 - -
Ssu5g0483 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 612 IPR001680 GO:0005515
Ssu5g0483 658 SUPERFAMILY WD40 repeat-like 326 653 IPR036322 GO:0005515
Ssu5g0483 658 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Ssu5g0483 658 SUPERFAMILY Taf5 N-terminal domain-like 43 180 IPR037264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0483 Ssu-Chr5 10170798 10186150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0483 470 657 Miscellaneous Gene Families AT5G08390 28.191 1.13e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0483 K03130 - gmx:100790500 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0483 5 10170798 10186150 Ssu1g3520 1 90018188 90028680 PCT