Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3520 ATGGAGGACGACAAAATCGTTGGATACGTTACCGCGTACCTTAAGAAGAAAGGGTTCACGCAAACGGAGAAGGTTTTTCAGGAAGAATTCCAACACAACAAGACCAGCAATTCCTCTGCCAACAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGAGTGGTCCTGCTAGGTTCCACGACGGCTATAGCAAACTAAGAACATGGACTTATTCTTCACTAGATTTGTACAAGCACGAGCTGCTTCGCGTGCTTTATCCGGTGTTTATCCACTGCTTTATGGATCTTGTCGCGAAAGGACACGTTCAAGAAGCTCGGAACTTTTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTACGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACACATCTGGAGGAAATGGAATTCGCACATTCACTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTACTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTTACCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCTGGAAGCAGCGAACCAGctaaatcaaaaagaaattcattGGGGGTTGCTTGAAGACTCTCTAGAAGAACGGCTAGAGAAGGCTGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAAGGGGAGAATGATGAGAGTAAGaaAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCagtcaaaaaagtaaaaaaggacAAGGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATGTCTGCAGCTCCTCGAGTAAAGCCAGAACTCCCCTTGCCCATAATCCCAACTGAGGTGGAACAATCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCACATGACGGATCATTGGTTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGCCCACCAATTCTCTTTCGCAGGGTGAGAATGACACAGCACAAAATGAACAAATGTTTGGGCAAGGTGGCGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAACCTGTTTTAGTCCTGTTGGGGATTTTATTCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGACATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTACGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAATTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGGTATGATTTTGGCTTTGGCAATGTCTCCCGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATAATGTGGGACCTTTCTAGTGGCCGCTGTCTCACACCTTTGATCGGGCACACGTCATGTGTCTGGTCACTCGCCTTCAGTTCTGAAGGTTCTATTCTAGCATCTGGATCTGCTGATTGCACAGTAAAATTATGGGATGTAAATACGAGCACCAAGGTTTCAAGAGCTGAAGAAAAAACTGGGAATGCTAACAGACTTAGATCACTGAAAACTCTGCCAACCAAATCTACTCCAGTTTACTCTTTGCGGTTTTCTCGAAGGAATCTTCTTTTGCGGCTGGAGCCCTAG 2001 0.4403 MEDDKIVGYVTAYLKKKGFTQTEKVFQEEFQHNKTSNSSANNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSLEAANQLNQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDESKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTMSAAPRVKPELPLPIIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPTNSLSQGENDTAQNEQMFGQGGGKRQYTLFQGHSGPVYATCFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILALAMSPDGRYMASGDEDGTIIMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKTGNANRLRSLKTLPTKSTPVYSLRFSRRNLLLRLEP 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3520 666 ProSitePatterns Trp-Asp (WD) repeats signature. 562 576 IPR019775 -
Ssu1g3520 666 PANTHER CANNONBALL-RELATED 3 663 - -
Ssu1g3520 666 SMART WD40_4 452 491 IPR001680 GO:0005515
Ssu1g3520 666 SMART WD40_4 340 379 IPR001680 GO:0005515
Ssu1g3520 666 SMART WD40_4 578 617 IPR001680 GO:0005515
Ssu1g3520 666 SMART WD40_4 494 533 IPR001680 GO:0005515
Ssu1g3520 666 SMART WD40_4 410 449 IPR001680 GO:0005515
Ssu1g3520 666 SMART WD40_4 536 575 IPR001680 GO:0005515
Ssu1g3520 666 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Ssu1g3520 666 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Ssu1g3520 666 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Ssu1g3520 666 PRINTS G protein beta WD-40 repeat signature 604 618 IPR020472 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 584 IPR001680 GO:0005515
Ssu1g3520 666 SUPERFAMILY WD40 repeat-like 341 657 IPR036322 GO:0005515
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Ssu1g3520 666 SUPERFAMILY Taf5 N-terminal domain-like 51 194 IPR037264 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 449 IPR001680 GO:0005515
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 626 IPR001680 GO:0005515
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 449 - -
Ssu1g3520 666 CDD WD40 417 662 - -
Ssu1g3520 666 Gene3D - 319 496 IPR015943 GO:0005515
Ssu1g3520 666 Gene3D - 497 662 IPR015943 GO:0005515
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 580 - -
Ssu1g3520 666 MobiDBLite consensus disorder prediction 244 290 - -
Ssu1g3520 666 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 189 IPR007582 -
Ssu1g3520 666 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 663 IPR037783 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 620 - -
Ssu1g3520 666 ProSitePatterns Trp-Asp (WD) repeats signature. 604 618 IPR019775 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 500 IPR001680 GO:0005515
Ssu1g3520 666 MobiDBLite consensus disorder prediction 244 306 - -
Ssu1g3520 666 Gene3D TFIID subunit TAF5, NTD2 domain 45 194 IPR037264 -
Ssu1g3520 666 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Ssu1g3520 666 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Ssu1g3520 666 Pfam WD domain, G-beta repeat 349 379 IPR001680 GO:0005515
Ssu1g3520 666 Pfam WD domain, G-beta repeat 456 491 IPR001680 GO:0005515
Ssu1g3520 666 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Ssu1g3520 666 Pfam WD domain, G-beta repeat 537 575 IPR001680 GO:0005515
Ssu1g3520 666 Pfam WD domain, G-beta repeat 496 533 IPR001680 GO:0005515
Ssu1g3520 666 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 538 - -
Ssu1g3520 666 CDD TAF5_NTD2 63 195 IPR007582 -
Ssu1g3520 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3520 Ssu-Chr1 90018188 90028680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3520 358 639 Miscellaneous Gene Families AT5G08390 23.793 8.33e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3520 K03130 - gmx:100781563 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0483 5 10170798 10186150 Ssu1g3520 1 90018188 90028680 PCT