Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0479 ATGATTCGATTTCCATTGGTGGTTCTTGTGTTGATAATTTGTGCCGTGAGATGCAGAATGGCCAGAGCAGAATCAAGTCCTGATTCTGGGAATGGATACACGCTAGCTTCAGTGAGGGAGGCTTTGGTTAGGCAAGAGGATACCATCATTTATGGTCTCATTGAGAGAGCCAAGTTCCCTAGCAATTCTCACAcctatgatgaaaaatatgctGAAATCCCAGGGTTTTGTGGCTCATTGGTGGAACTCGTTGTTAAGAATACAGAGGCCCTTCAAGCTAAAGCTGGAAGATACAAAAACCCTGAAGAAAATCCATTCTTCCCAGAAAATTTACCACCATCAATGGTGCCATCTTACCCCTTCACACAGATTTTGCATCCTGGAGCCGCTTCAATTGACATAAACAAGTCCATCTGGAAAATGTATTTCCAAGAGTTACTTCCATTGCTTGCTACTTCGGGTGATGATGGCAATTATGCGCAAACTGCAGCTAGTGATCTTTCATTATTGCAGGCCATCTCTAGAAGGATTCATTATGGAAAGTTTGTAGCTGAGGTGAAATTCAGGGATTCTCCTCAAGACTACGAGCCTTTAATTCGAGCTAAGGACAGAGAAGgattgatgaaattgttgacaTTTAGGAGCGTTGAAGAGATGGTGAGGAAGAGGGTTGAAAAGAAGGCCACGGTGTTTGGGCAGGAAGTAAGTCTTAACCGTGATGATGGTGacaatgaaaaacaaaagtttgATCCATCAGTGGCCTCTCGGTTGTACCAAAACTGGGTAATACCTCTTACCAAGGAGGTTCAGGTGGAGTACCTCTTGCGCCGTCTAGACTGA 840 0.4155 MIRFPLVVLVLIICAVRCRMARAESSPDSGNGYTLASVREALVRQEDTIIYGLIERAKFPSNSHTYDEKYAEIPGFCGSLVELVVKNTEALQAKAGRYKNPEENPFFPENLPPSMVPSYPFTQILHPGAASIDINKSIWKMYFQELLPLLATSGDDGNYAQTAASDLSLLQAISRRIHYGKFVAEVKFRDSPQDYEPLIRAKDREGLMKLLTFRSVEEMVRKRVEKKATVFGQEVSLNRDDGDNEKQKFDPSVASRLYQNWVIPLTKEVQVEYLLRRLD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0479 279 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 28 279 IPR037039 GO:0004106|GO:0009073
Ssu5g0479 279 ProSiteProfiles Chorismate mutase domain profile. 26 279 IPR008238 GO:0004106|GO:0009073
Ssu5g0479 279 PIRSF Chor_mut_AroQ_eu 21 279 IPR008238 GO:0004106|GO:0009073
Ssu5g0479 279 SUPERFAMILY Chorismate mutase II 30 279 IPR036263 GO:0046417
Ssu5g0479 279 TIGRFAM CM_pl-yst: chorismate mutase 34 279 IPR008238 GO:0004106|GO:0009073
Ssu5g0479 279 PANTHER CHORISMATE MUTASE 6 279 - -
Ssu5g0479 279 PANTHER CHORISMATE MUTASE 6 279 IPR008238 GO:0004106|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0479 Ssu-Chr5 10033044 10035060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0479 K01850 - gmx:100791341 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0479 5 10033044 10035060 Ssu5g0479 5 10033044 10035060 ECH
Ssu5g0479 5 10033044 10035060 Ssu1g3526 1 90186469 90188670 PCT