Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3526 ATGATGCTTCGATTTCTAGTGGCGCTTCTTGTGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTACACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGCTTTGATTGAGAGAGCCAGGTTCCCCTTAAATTCTCCCACCTATCATCGAAATTACACTTCCATTCTCCAATTTTATGGCTCATTGCTTGACTTCCTTGTTAGTAAGACAGAGGCCATTCAGGCTAAGGCAGGAAGATACATTAATCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACATTACCCCTTCTCACTGtttttgcatCCTGCAGCTGCTTTGATTAACACAAACAAGGTCATTTGGAAACTGTACTTTAATGAGCTGCTTCCAATGTTTGTTGCTTCCGGTGATGATGGCAACTATGCACAAACTGCTGCTACCGATCTTTCATTATTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTGGCCGAGGCCAAATTCAGAGAATCACCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGGACAGAGAAGcattgatgaaattgttgacaTCTGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGACAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAGGAAAATCCAAGGTTGATCCATCAGTAGTTTCTTTCTTGTACCAGAAATGGATAATACCCCTCACAAAAAATGTTCAAGTCGAGTACTTACTACGCCGCCTCGATTGA 816 0.4203 MMLRFLVALLVLASCRESYKMAKAEYTVDSARASLVRQEDTIIFALIERARFPLNSPTYHRNYTSILQFYGSLLDFLVSKTEAIQAKAGRYINPEENPFFPENLPPSVVPHYPFSLFLHPAAALINTNKVIWKLYFNELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVAEAKFRESPQGYEPLIRAKDREALMKLLTSESVEEMVVKRVKKKAMVFGQEVSLDRDVKGGKSKVDPSVVSFLYQKWIIPLTKNVQVEYLLRRLD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3526 271 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Ssu1g3526 271 SUPERFAMILY Chorismate mutase II 25 271 IPR036263 GO:0046417
Ssu1g3526 271 TIGRFAM CM_pl-yst: chorismate mutase 28 271 IPR008238 GO:0004106|GO:0009073
Ssu1g3526 271 ProSiteProfiles Chorismate mutase domain profile. 19 271 IPR008238 GO:0004106|GO:0009073
Ssu1g3526 271 PIRSF Chor_mut_AroQ_eu 17 271 IPR008238 GO:0004106|GO:0009073
Ssu1g3526 271 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 21 271 IPR037039 GO:0004106|GO:0009073
Ssu1g3526 271 PANTHER CHORISMATE MUTASE 1 271 IPR008238 GO:0004106|GO:0009073
Ssu1g3526 271 PANTHER CHORISMATE MUTASE 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3526 Ssu-Chr1 90186469 90188670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3526 K01850 - gmx:100791095 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3526 1 90186469 90188670 Ssu1g3526 1 90186469 90188670 ECH
Ssu5g0479 5 10033044 10035060 Ssu1g3526 1 90186469 90188670 PCT