Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0477 atgaagtttatgAAATTGGGTTCGAAGCCTGATGCTCTTCAAGCTGATGGAAAGTCTATCAGGTATATATCATCTGAACTGGCTACAGATATTGTCATAACTGTTGGTGAAGTTAAGTTTCACCTTCACAAGTTCCCTCTACTGTCCAAGAGCAATCGTTTGCAAAAGTTGCTGTCAAAGGCTAATGAAGAGAATTCTGATGAAATTCAATTGGATGATTTTCCTGGTGGTCCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTTACTCTCAATGCTTACAATGTTGTGGCTGCTCGTTGCGCAGCTGAGTACCTTGAGATGACTGAGGCTATTGATAGAGGaaacttaattttcaaaattgaggTGTTTCTTACCTCAGGTATCTTTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTTATGCCATGGTCTGAGGACCTAAAGATTGTTGGGAGATGTATAGATTCCATAGCTTCTAAAACTTCTGTGGACCCAGCAAACATCACTTGGTCTTACACTTATAACCGGAAATTATCAGAGCTTGATAAAATTGTTGAGGACAAGATAACACCACAAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAGCTGGACATTGATCTTTATAAACGGGTGATGATTACTGTCAAATCAAAGGGAAGAATGGATGGAGTTGTGATTGGTGAGGCATTAAAAAACTATGCTGTAAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCCCATGCCCGGAGGAACAAAGCTCTAGTAGAAACAATTGTCTGTTTATTGCCATGTGATAATGGCATGGGTTGTTCATGTAGTTTCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTTGAAGCCGATGAGTCTTCAAGGGAACAATTGATGAAGAGCATTGGCCTAAAATTGCATGAAGCTTCTGTCAAAGATTTACTAATTCCAGCAAGGTTTCACCAGAATACCAAATATGATGTTGATTTGGTCCAAGATCTTTTGAATCTATACATGACTAACATAAAGGGCAGCTGCAATATGGAGGTTGAGGAGAAGAAAGATGAAgcaaatgatgaatctattttAGGGCAGAGGTCTCTATTGAGTGTTGGCAAGTTAGTAGACAGTTATCTTGGAGAAATTGCACATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGATTTGTCACAGTCAATTCCAGGGTTTGCTAGACCAAATCATGATGGTCTGTACAGAGCTACAGACATCTACTTGAAGGAGCACCCAAGTTTGACAAAAGCTGAAAGGAAGAAGATATGTGGACTGATGGACTGTCAAGAAATTGACAGTGGATGCATCAATGCATGCTGCACAGAACGAACGCCTTCCTCTTCGAGTGGTGGTGCAAGTTCTCTATTTTGA 1455 0.3897 MKFMKLGSKPDALQADGKSIRYISSELATDIVITVGEVKFHLHKFPLLSKSNRLQKLLSKANEENSDEIQLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEAIDRGNLIFKIEVFLTSGIFRSWKDSIIVLQTTKSLMPWSEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSELDKIVEDKITPQEKIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKNYAVRWLPDSVDALVSDAHARRNKALVETIVCLLPCDNGMGCSCSFLLKLLKVAILVEADESSREQLMKSIGLKLHEASVKDLLIPARFHQNTKYDVDLVQDLLNLYMTNIKGSCNMEVEEKKDEANDESILGQRSLLSVGKLVDSYLGEIAHDPNLSLSSFVDLSQSIPGFARPNHDGLYRATDIYLKEHPSLTKAERKKICGLMDCQEIDSGCINACCTERTPSSSSGGASSLF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0477 484 SUPERFAMILY POZ domain 23 117 IPR011333 -
Ssu5g0477 484 SMART BTB_4 29 127 IPR000210 GO:0005515
Ssu5g0477 484 CDD BTB_POZ_NPY3-like 21 124 - -
Ssu5g0477 484 Pfam NPH3 family 211 458 IPR027356 -
Ssu5g0477 484 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 472 IPR029961 GO:0060918|GO:0099402
Ssu5g0477 484 ProSiteProfiles NPH3 domain profile. 211 484 IPR027356 -
Ssu5g0477 484 PANTHER OS12G0117600 PROTEIN 4 472 IPR043454 -
Ssu5g0477 484 Gene3D Potassium Channel Kv1.1; Chain A 8 121 IPR011333 -
Ssu5g0477 484 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Ssu5g0477 484 Pfam BTB/POZ domain 26 117 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0477 Ssu-Chr5 10010733 10014574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0477 22 473 EF-hand Containing Proteins AT3G44820 32.917 1.98e-82 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0477 - - gmx:100790291 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0477 5 10010733 10014574 Ssu5g0477 5 10010733 10014574 ECH
Ssu5g0477 5 10010733 10014574 Ssu1g3529 1 90208048 90210264 PCT