Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3529 ATGACTGTTACTCTTAACGCTTACAATGTTGTAGCTGCTCGTTGTGCAGCAGAGTACCTTGACATGACTGAGGATGTTGATAGAGGAAACTTGGTTTTAAAGATTGAGGTGTTTCTTAACTCAAGTATCTTCCGTCGCTGGAAGGATTCTATAATTGTTCTCCAAACTTCTAAATCTCTTCTGCCATGGTCTGAGGATCTGAAGATCATTGGAAGATGCATAGATTCCATAGCTTCTAAAACTAGTGTGGACCCATCATACATCTCTTGGTCTTACACTTACAATAGGAAATTAGCTGAACCTGATAAAATTGTAGAGGACAAGATGAAATTTCTAGATAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGAAAGAATGGATGGTGTTGTGATTGGGGAGGCACTAAAAACCTATGCATTAAGATGGATACCTGATTCTGTTGATACATTGGTTTCTGATGCCAACACCTCTAGGACCAAATCTGTAGTAGAAGCAATTGTCTGTTTATTGCCATATGATAATGGCATCAGTTGTTCGTGTAGTTTCTTGCTGAAGCTACTGAGAGTGGCCATATTAGTCAGAGCAAATGAGTCATCAAGAGAAGAATTGATGAAGAGCATTAGCCTCAAATTGCATGAAGCTTGTGTCAAAGATTTATTGATTCCAGCAAGGTCTCCCCAGCTTACCACATATGATTGTCATTTGGTACAAGGTCTTTTGAATCAATACATGAATCATGAAAAGGGAAGCTGTGATATGGAGCTTGTTGAGGAGAAAGATAGAGGAGAAGATAAATATAGTTTAGCACGCAGGTCTTTATTGAATGTTGGTAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGTCTCTCTAGTTTTGTTGATTTGTCACAATCCATTCCTGGATTTGCTAGACCAGATCACGATGGTTTGTACAGAGCTATTGATATCTACTTGAAGGAGCACCCAGATTTGACAAAAGCTGAAAGGAAGAAACTATGTGGACTGATGGATGTCCGAAAATTGACAGCAGATGCTTCTATGCATGCTGCACAAAATGAATGCCTTCCTCTTCGAGTTGTAGTGCAGGTTCTCTTTTTTGATCAGGTCAGGTCTTCTATCAGCTCTCAAACACTCGGTAACAACAGCGCACGTGATCCTTCACACTCTCCGATGAACCACGATGAAGGATGTAAGCAAACAGTGGGAGATAGCTGCCAATCCCTCAAGAACCAGATCAGTCATTTGAGGATCAAGGATGAAGGGTTACATGAAAATGGGAAATTGAGTAAGAAGAATAACAAAAACAGCAAAAGTGGCATCCAGTTGCTGCCATCACGGTCGAGGAGAATCTTTGACAAGTTATGGAGTGTGAGAAAAGGGCAAGGAGAGAATAGGAGCTCAGAGACTTCAGGGAGTTCTAGTAGCCCAACTTCATTAGGCCAGGGAGATACCAAATCATATGGCCTATCTTCGAGACACCAGAGGCATTCTATCTCTTAG 1584 0.4078 MTVTLNAYNVVAARCAAEYLDMTEDVDRGNLVLKIEVFLNSSIFRRWKDSIIVLQTSKSLLPWSEDLKIIGRCIDSIASKTSVDPSYISWSYTYNRKLAEPDKIVEDKMKFLDKIESVPKDWWVEDICELDIDLYKRVMVAVKSKERMDGVVIGEALKTYALRWIPDSVDTLVSDANTSRTKSVVEAIVCLLPYDNGISCSCSFLLKLLRVAILVRANESSREELMKSISLKLHEACVKDLLIPARSPQLTTYDCHLVQGLLNQYMNHEKGSCDMELVEEKDRGEDKYSLARRSLLNVGKLVDGYLGEIAHDPNLGLSSFVDLSQSIPGFARPDHDGLYRAIDIYLKEHPDLTKAERKKLCGLMDVRKLTADASMHAAQNECLPLRVVVQVLFFDQVRSSISSQTLGNNSARDPSHSPMNHDEGCKQTVGDSCQSLKNQISHLRIKDEGLHENGKLSKKNNKNSKSGIQLLPSRSRRIFDKLWSVRKGQGENRSSETSGSSSSPTSLGQGDTKSYGLSSRHQRHSIS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3529 527 MobiDBLite consensus disorder prediction 404 430 - -
Ssu1g3529 527 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 1 513 IPR029961 GO:0060918|GO:0099402
Ssu1g3529 527 MobiDBLite consensus disorder prediction 484 527 - -
Ssu1g3529 527 MobiDBLite consensus disorder prediction 444 470 - -
Ssu1g3529 527 MobiDBLite consensus disorder prediction 444 459 - -
Ssu1g3529 527 Pfam NPH3 family 121 374 IPR027356 -
Ssu1g3529 527 PANTHER OS12G0117600 PROTEIN 1 513 IPR043454 -
Ssu1g3529 527 ProSiteProfiles NPH3 domain profile. 121 398 IPR027356 -
Ssu1g3529 527 MobiDBLite consensus disorder prediction 488 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3529 Ssu-Chr1 90208048 90210264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3529 3 397 EF-hand Containing Proteins AT3G44820 33.571 9.72e-67 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3529 - - gmx:100784205 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3529 1 90208048 90210264 Ssu1g3529 1 90208048 90210264 ECH
Ssu5g0477 5 10010733 10014574 Ssu1g3529 1 90208048 90210264 PCT