Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0476 ATGGCGTTTTGGAGATCCCTCGCGTTCTCTGCGATCCTTCTCTCGCTCTTCATCCATGGCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGGGAGATCCATTGCAAGTGAAAGTAAACAAATTAACTTCAACAAAGACCCAGCTTCCATACACATATTATTCTCTTCCTTATTGTCCGCCAGATAAAATAGTGGATAGTGCTGAAAATCTTGGAGAAGTGCTGCGTGGTGATCGCATTGAAAATTCTCATTATGTGTTTAAAATGCGTGAACCACAAATGTGCAATATCGTGTGTAAGGTTAAACTTGATGCCAAAACTGCAAAAGAGTTCAAAGAGAAGATTGATGATGAGTATCGAGTGAACATGATCCTAGATAACCTTCCTCTGGTTGTTCCCATAAAACGGGTGGATCCGGATTCTACTGTTTATCAACTTGGTTTCCATGTTGGACTCAAAGGGCAGTATAGTGGGAGCAAGGAggagaaatattttattcacaACCATTTGGCTTTTACTGTCAAGTATCATAGAGATACTCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAGGCCATTCAGTGTTAGACATGAATATGAAGGGAAGTGGGATGATGAAAAGACCCGATTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACACTCCTCAAGAAGTCGATGAGAACAAGGAAATTATATTCACATATGATGTTGAATTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTGATGAGTGATGACCAAATTCACTGGTTCTCAATTGTGAACTCATTGATGATTGTTCTCTTTCTCTCGGGCATGGTAGCAATGATAATGCTGCGTACACTTTACCGTGATATTTCAAAGTACAACGAGTTAGAAACCCAAGAAGAAGCACAGGAAGAAACTGGTTGGAAGCTTGTCCATGGTGATGTTTTTAGGCCACCAAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACCGGTGTTCAGTTTTTTGGGATGATACTAGTAACAATGATGTTTGCTGTGCTGGGGTTCCTTTCACCTTCAAACCGAGGTGGGCTAATGACAGCCATGCTCTTGCTTTGGGTTTTCATGGGGATTTTTGCTGGTTATGCCTCATCCCGCTTATATAAAATGTTCAAAGGAGGGGAGTGGAAGAAAATTGCCCTCAGAACTGCAATCATATTCCCTGCAATAgtttctgccattttctttgtATTAAATGCTCTCATATGGGGACAAAAATCATCTGGAGCCGTGCCATTTGGAACAATGTTTGCCCTGATCTTTTTATGGTTTGGGATCTCGGTTCCACTTGTTTTTGTGGGTGCCTATGTTGGATTTAAGAAGCCTGCAATTGAGAATCCTGTGAAGACAAACAAAATCCCGAGGCAGATCCCTGAGCAGGCATGGTACATGAATCCAGTCTTCTCAGTTCTGATTGGTGGAATACTTCCATTTGGAGCTGTTTTCATTGagcttttctttatcctcactTCAATCTGGTTGAATCAGTTTTACTACATCTTCGGCTTCCTCTTTTTGGTCTTCGTCATCCTCATTGTCACTTGTGCTGAAATAACCATTGTGCTTTGCTACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGGTCTTACCTCACATCGGGCTCTTCTGCTCTGTACCTCTTTCTTTATGCGACATTCTACTTCTTCACTAAGCTTGAAATCACGAAGTTGGTATCTGGGTTATTATACTTTGGTTACATGCTTATAGCGTCCTATGCCTTCTTTGTTGTAACCGGAACCATCGGATTTTACGCATGCTTTTGGTTCACAAGGCTCATCTACTCCTCAGTCAAAATTGATTAG 1914 0.4122 MAFWRSLAFSAILLSLFIHGALCFYLPGVAPQDFQKGDPLQVKVNKLTSTKTQLPYTYYSLPYCPPDKIVDSAENLGEVLRGDRIENSHYVFKMREPQMCNIVCKVKLDAKTAKEFKEKIDDEYRVNMILDNLPLVVPIKRVDPDSTVYQLGFHVGLKGQYSGSKEEKYFIHNHLAFTVKYHRDTLTESARIVGFEVRPFSVRHEYEGKWDDEKTRLTTCDPHAKHTVVNSNTPQEVDENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMMFAVLGFLSPSNRGGLMTAMLLLWVFMGIFAGYASSRLYKMFKGGEWKKIALRTAIIFPAIVSAIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGAYVGFKKPAIENPVKTNKIPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGLLYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0476 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 637 - -
Ssu5g0476 637 Pfam Endomembrane protein 70 55 593 IPR004240 GO:0016021
Ssu5g0476 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 5 637 IPR004240 GO:0016021
Ssu5g0476 637 SUPERFAMILY MFS general substrate transporter 275 461 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0476 Ssu-Chr5 9955977 9960488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0476 11 637 Miscellaneous Gene Families AT5G10840 86.328 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0476 K17086 - gmx:100810506 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0476 5 9955977 9960488 Ssu5g0476 5 9955977 9960488 ECH
Ssu5g0476 5 9955977 9960488 Ssu1g3530 1 90223931 90227826 PCT