Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3530 ATGGCGTTTTGGAGATCTCTCGCGTTCTCTGCGGTTCTTCTGCTTCTCATCCATGGCGCTCACTGCTTCTACCTCCCTGGCGTCGCTCCACAGGACTTCCAGAAGGGAGATCTATTGCAAgtgaaagtaaataaattaacatcaaCAAAGACCCAGCTTCCATATACATATTATTCACTTCCTTATTGTGCTCCGGCAAAAATACAGGATAGTGCAGAAAATCTTGGGGAAGTGCTTCGTGGTGACCGCATTGAAAATTCTCTTTATGTGTTTAAAATGCGTGAACCACAAATGTGCAATATTGTGTGTAATCTCAAACTTGATGCTAAAACTGCTAAGGAGTTTAAAGAGAAGATCAGTGATGAGTATCGGGTGAACATGATCCTAGATAACCTACCTCTAGTTGTTCCCTTAAAACGGAATGATCAGGATTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTAAAAGGGCAGTATAGTGGGAGCAAGGAGAAGTATTTTATTCACAACCATTTGGCATTTACTGTCAAGTACCATAAAGATGTACTAACTGAATCTGCCAGAATTGTGGGCTTTGAGGTTAAGCCATTCAGTGTTAAACATGAATACGAAGGTAAATGGGATGCAAAAACGACTCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACACACCGCAAGAGGTTGAAGAGAACCAGGAAATTATCTTCACATATGATGTTGAATTCCAGGAGAGTGACGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAATGATGATCAAATCCACTGGTTCTCAATTGTTAACTCACTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAATGATAATGCTGCGGACACTGTACCGTGACATTGCAAAGTACAATGAGCTTGAGACCCAAGAAGAAGCCCAAGAGGAAACTGGTTGGAAGCTTGTCCATGGTGATGTATTTAGGCCTCCCAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACTGGTGTTCAGTTTTTTGGCATGATACTAGTAACCATGATATTTGCTGTCTTTGGGTTCCTTTCTCCTTCAAACCGAGGTGGGCTGATGACAGCCATGCTCTTGCTGTGGGTTTTCATGGGAATTTTTGCTGGGTACTCATCAACTCGCTTGTACAAAATGTTCAAAGGATCAGAGTGGAAAAGAATTGCCCTCAGGACTGCAACCTTGTTCCCTGCAGTTGTCTCTGCCATTTTCTTTGTATTAAATGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACAATGTTTGCTCTGATCTTTTTATGGTTTGGGATCTCGGTTCCACTTGTTTTTGTGGGTAGCTATGTTGGATTCAAGAAGCCTGCAATTGAGAATCCTGTGAAAACAAACAAGATCCCAAGGCAGATCCCTGAGCAGGCGTGGTACATGAACCCTGTTTTCTCAGTTCTGATTGGTGGAATACTCCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTCACCTCAATCTGGTTGAATCAGTTTTACTACATCTTTGGATTCCTCTTTTTGGTCTtcatcatcctcatcatcaCTTGTGCTGAAATAACCATTGTGCTGTGCTACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGGTCATACCTTACTTCCGGTTCCTCTGCACTTTACCTCTTTCTTTATGCAACTTTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTATCTGCGATATTCTACTTTGGGTACATGCTTATAGCTTCTTATGCATTTTTTGTGGTGACCGGTACTATCGGATTTTATGCATGCTTTTGGTTCACTAGGCTCATCTACTCCTCAGTCAAAATTGATTAG 1908 0.4151 MAFWRSLAFSAVLLLLIHGAHCFYLPGVAPQDFQKGDLLQVKVNKLTSTKTQLPYTYYSLPYCAPAKIQDSAENLGEVLRGDRIENSLYVFKMREPQMCNIVCNLKLDAKTAKEFKEKISDEYRVNMILDNLPLVVPLKRNDQDSTVYQLGFHVGLKGQYSGSKEKYFIHNHLAFTVKYHKDVLTESARIVGFEVKPFSVKHEYEGKWDAKTTRLTTCDPHAKHTVVNSNTPQEVEENQEIIFTYDVEFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMIFAVFGFLSPSNRGGLMTAMLLLWVFMGIFAGYSSTRLYKMFKGSEWKRIALRTATLFPAVVSAIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGSYVGFKKPAIENPVKTNKIPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILIITCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3530 635 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 5 635 IPR004240 GO:0016021
Ssu1g3530 635 Pfam Endomembrane protein 70 54 591 IPR004240 GO:0016021
Ssu1g3530 635 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 635 - -
Ssu1g3530 635 SUPERFAMILY MFS general substrate transporter 275 459 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3530 Ssu-Chr1 90223931 90227826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3530 8 635 Miscellaneous Gene Families AT5G10840 85.103 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3530 K17086 - gmx:100780976 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3530 1 90223931 90227826 Ssu1g3530 1 90223931 90227826 ECH
Ssu5g0476 5 9955977 9960488 Ssu1g3530 1 90223931 90227826 PCT