Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0472 ATGTCTGCACCTTTCTTCCCTCAAAACAAtcacaccctttttttttacctagTTATTCCACTTCAattcagtttttcttttttgtgttttttgtgcTCAGTGAAGTTGAGGTGCAGAGGGGTTAACCCAAATGACCATCCCGTCAAATCCGAGCTTGACAAGATAAACGTGTTACAGAAGAAACTGGAACGCCTCCCGCGTTTGAGTGAAGTGCAGAGGCAAGATATGAAGAACATAAGTGGAGGGGAGGGACCAGAGACGAACTATCAGGAACGGGCTGGTCAAAAGAGGAAGTATCCATCTTCTGAAGAACAGTCTGTTCAAATTGATGCCATGGAATCCCTGGAGAATGAAAAGGGGGAACATCTTGATGATAATAATGGAAATATTAAGGGAGCAATAGTAATTGACATttcagatgatgatgatgagctACTTGCACCTTAG 447 0.3647 MSAPFFPQNNHTLFFYLVIPLQFSFSFLCFLCSVKLRCRGVNPNDHPVKSELDKINVLQKKLERLPRLSEVQRQDMKNISGGEGPETNYQERAGQKRKYPSSEEQSVQIDAMESLENEKGEHLDDNNGNIKGAIVIDISDDDDELLAP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0472 148 MobiDBLite consensus disorder prediction 69 130 - -
Ssu5g0472 148 PANTHER EXOSOME-ASSOCIATED FACTOR RRP47/DNA STRAND REPAIR C1D-RELATED 30 144 - -
Ssu5g0472 148 PANTHER SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR 30 144 IPR011082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0472 Ssu-Chr5 9928552 9929872 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0472 K12592 - gmx:100500667 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0472 5 9928552 9929872 Ssu5g0472 5 9928552 9929872 ECH
Ssu5g0472 5 9928552 9929872 Ssu1g3532 1 90235513 90236765 PCT