Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0443 ATGGCTTCCGTTTCCGTTTCCGTTTCAATGGCTCTGCCACTGAGCTCCGCCGCCCACAACAGGTCAAACCTTCCCTCCTCCGAAGCCTTCTTCAGGCCACTGAAGAGGAGCAGCGTGGTGAAGAAGTCAGAGCCAAGACCCGAGCTCAACGTTGAAGCATCTTTGAAGGAAAAAGCAGTGAAGGGTCTCGCAGCAGCTGCCGCAACATCGTGCGTGGTGATCCCAGAAGTGGCTCACGCAGCGGGAAATGACTTCTCACCTTCCCTCAAAAACTTTCTGGTCAGCATTGCGGCCGGCGGAGTTGTGCTCGCAGCACTGCTTGGTGCCGTTATAGGAGTTGCCAACTTTGATCCAGTTAAGAGAACTTGA 369 0.5447 MASVSVSVSMALPLSSAAHNRSNLPSSEAFFRPLKRSSVVKKSEPRPELNVEASLKEKAVKGLAAAAATSCVVIPEVAHAAGNDFSPSLKNFLVSIAAGGVVLAALLGAVIGVANFDPVKRT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0443 122 PANTHER OS07G0673550 PROTEIN 1 122 - -
Ssu5g0443 122 Pfam Photosystem II reaction centre X protein (PsbX) 86 121 IPR009518 GO:0009523|GO:0015979|GO:0016020
Ssu5g0443 122 Gene3D Single helix bin 85 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0443 Ssu-Chr5 9217172 9217540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0443 - - cit:102612959 120.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0443 5 9217172 9217540 Ssu5g0443 5 9217172 9217540 ECH
Ssu1g3593 1 91311397 91311762 Ssu5g0443 5 9217172 9217540 ECH