Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3593 ATGGCTTCTGCTTCTGTTCCAATGGCTTTGTCTCTGAGCCCTGTTACCCAGAACCAGCCTTCATCCGGAGCCTTCTTCAGGCCATTACCCTTAAGACAACCAAAGAGGACCCTCTTTACAAAGCCACTGTCAAAATCCAAGGTTCAAATTCATGCATCTTTGAAGGAGAAGGCACTGACAGGACTCACAGCCGCTTCCTTGACAGCCTCTATGGTGATTCCGGAGGTGGCTCATGCTGCTGGATATGATTTCTCCCCATCTCTCAAGAACTTTCTACTCAGCATTTTCGCTGGTGGGGTTGTGCTAGCAGCCTTATTTGGAGCCGTTATTGGGGTTGCCAACTTTGATCCGGTTAAGAGAACTTAA 366 0.4836 MASASVPMALSLSPVTQNQPSSGAFFRPLPLRQPKRTLFTKPLSKSKVQIHASLKEKALTGLTAASLTASMVIPEVAHAAGYDFSPSLKNFLLSIFAGGVVLAALFGAVIGVANFDPVKRT 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3593 121 Gene3D Single helix bin 84 121 - -
Ssu1g3593 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
Ssu1g3593 121 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Ssu1g3593 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3593 Ssu-Chr1 91311397 91311762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3593 - - gmx:100305487 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3593 1 91311397 91311762 Ssu1g3593 1 91311397 91311762 ECH
Ssu1g3593 1 91311397 91311762 Ssu5g0443 5 9217172 9217540 ECH