Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0417 ATGCAAGGCCTTCGCCGCTGCTCAAACGACGTCGTTCAACTAGACCTCTCCACCACCGCCGCCGCCTCCGCCACCAGCTCCTCCTCTTCTCTCTCCATCGACGTGGACGAATCAGCGGAGGCCCGCATCCAGCGCCTGATATCGGAGCACCCGGTGATCATCTTCACGCGCTCCGCGTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCCACCATCGGCGTCAACCCCACCGTCATCGAATTGGACGACCACGAGATCGCCGCCCTCCCCCTCcccgacaacaacaacaacaacaactgcAACCGCAACCCCACCCCCGCCGTCTTCATCGGCGGCGCCCCCGTCGGCGGCCTCGAATCCCTCGTCGCCCTCCACGTCACCGGCCACCTCGTCCCCAAACTCGTCCAAGTCGGCGCTCTCTGGGGACAATCATGGCCGTCCAAAAGAGGATTTTTTTAG 462 0.6017 MQGLRRCSNDVVQLDLSTTAAASATSSSSSLSIDVDESAEARIQRLISEHPVIIFTRSACCMCHVMKKLLATIGVNPTVIELDDHEIAALPLPDNNNNNNCNRNPTPAVFIGGAPVGGLESLVALHVTGHLVPKLVQVGALWGQSWPSKRGFF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0417 153 SUPERFAMILY Thioredoxin-like 39 142 IPR036249 -
Ssu5g0417 153 Pfam Glutaredoxin 52 113 IPR002109 -
Ssu5g0417 153 PANTHER GLUTAREDOXIN-C6 5 142 - -
Ssu5g0417 153 PRINTS Glutaredoxin signature 113 126 IPR014025 -
Ssu5g0417 153 PRINTS Glutaredoxin signature 99 112 IPR014025 -
Ssu5g0417 153 PRINTS Glutaredoxin signature 52 70 IPR014025 -
Ssu5g0417 153 Gene3D Glutaredoxin 33 144 - -
Ssu5g0417 153 ProSiteProfiles Glutaredoxin domain profile. 40 142 - -
Ssu5g0417 153 PANTHER GLUTAREDOXIN 5 142 IPR011905 -
Ssu5g0417 153 TIGRFAM GlrX-like_plant: glutaredoxin-like family 43 142 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0417 Ssu-Chr5 8665589 8667396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0417 43 142 Miscellaneous Gene Families AT4G15690 43.564 4.78e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0417 - - gmx:100778024 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0417 5 8665589 8667396 Ssu1g3628 1 91857841 91858550 PCT