Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0402 ATGGAACGTGCTCGCAGGCTTGCAAACCGCGCCATTCTGAAGCGTCTGGTTTCAGAGGCGAAGCAGTATCAGAAGAATGAATCCGTGTTGCACTCATCCACCACCCCCATGTTGCTGTACTCTTCCTCCAGGTGCATGTCCTCTGTTTCCTCCCCTGTTCTGCGAAGCAGGGGATCCAAATCAGAGAACCTTCTGGGGAGGAACACGAGCATCACCCACATGTCGCGCGGCGCTGTTGGCGGTTTTCTCGGCGTTGGCTCCACCCGATCCGTCTCGGTTGAAGCGCTTCAACGGAGCGACACTTTCCCACGGCGCCACAACTCTGCCACCCCGGAGGAACAGGGCAAGATGGCAGAGTCGTGTGGCTTTGAGAGCCTTGATTCCCTCGTGGACGCGACCGTGCCTAAATCGATCCGCCTGAAGGAGATGAAGTTTGGAAAATTCGACGCAGGGTTGACGGAGAGCCAGATGATTGAGCACATGAAGGACTTGGCCTCAAAGAACAAGGTTTTCAAGTCCTACATTGGGATGGGGTACTACAACACTCATGTTCCACCAGTGATCTTGAGGAACATAATGGAGAACCCTGCCTGGTACACTCAGTACACCCCTTACCAGGCTGAGATATCTCAGGGGAGGCTCGAGTCACTGCTGAATTACCAGACCATGATCACTGACCTCACTGGCTTGCCTATGTCCAATGCTTCACTGCTTGATGAGGGCACTGCTGCAGCTGAGGCAATGTCCATGTGCAACCACATTcagaaagggaagaagaagaccTTCGTCATTGCAAGCAACTGCCACCCTCAGACCATTGATGTCTGCGAGACAAGGGCTGCTGGATTTGATCTCAAGGTTGTGACAGCAGATCTTAAGGACATTGATTACAAGTCTGGGGATGTGTGTGGTGTGCTTGTGCAGTACCCTGGGACTGAGGGTGAGGTTTTGGACTATGGGGAGTTTATCAAGAAGGCTCATGCTCATGAGGTGAAGGTTGTCATGGCAAGTGATTTGTTGGCACTGACTGTGTTGAAGCCTCCAGGGGAGTTGGGGGCAGATATTGTTGTTGGCTCGACTCAGAGGTTTGGGGTGCCAATGGGGTATGGAGGCCCTCACGCAGCTTTCTTGGCCACTTCACAAGAGTACAAGAGGATGATGCCTGGGAGAATCATTGGGGTCAGTGTTGATTCTTCTGGAAAGACTGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTGTATCATGGACCTGAAGGCCTTAAGAACATTGCACAACGTGTTCATGGTCTTGCTGGGGTATTTGCTCATGGATTAAAGAAACTTGGAACGGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAGGTTAAGACTTCCAATGCACATGCAATTGCTGATGCTGCTCTcaaaagtgaaataaatttGCGAGTTGTGGATGGACACACTATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGAAAGCCAGTCTCCTTTGCAGCTGCATCTATTGCACCAGAAGTTCAGAGTGTGATTCCTTCTGGATTAGCTAGGAAGAGCCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTTAGGTACATGCATAGGCTACAATCAAAAGATCTCTCACTATGCCACAGTATGATCCCACTGGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAACTTCGCTGATATTCACCCTTTTGCACCACTTGACCAGGCTCAAGGTTATCAGGAAATGTTCAACAATTTGGGTGAACTATTGTGCACTATTACCGGGTTTGACTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTTAtggttattcgtgcatatcatTTGGCAAGAGGAGACCACCATCGCAATGTGTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTCTCTGTTGGAACTGATGCCAAGGGAAACATTAACATAGAAGAGTTGAGGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCACGGTGTTTATGAGGAAGGTATTGATGAGATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCAACATGAATGCTCAGGTGGGACTCACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCATCTCAATCTCCATAAGACATTTTGCATCCCCCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACACCCTGTGGTAGCAACTGGTGGAATTCCTGCTCCTGACAAACCTCAACCACTTGGTACTATCTCTGCTGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACACTTACATAGCCATGATGGGTTCTGAAGGACTCACCGATGCATCAAAGATAGCCATTTTGAATGCAAACTACATGGCCAAACGATTGGAGAATTATTACCCGGTTCTTTTCCGCGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTCAAGCAAACTGCTGGAATTGAGCCTGAAGATGTTGCAAAGCGCCTCATGGACTATGGTTTCCATGCACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCCACTGAGAGTGAAAGCAAGGCTGAGTTAGACAGGTTCTGTGATGCTCTTATTTCCATCAGAGAAGAAATTGCTGAGATTGAAAAAGGAAAGGCTGACATTAACAACAATGTACttaagGGGGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCTTACTCCAGGGAATATGCAGCCTTCCCAGCTTCATGGCTCCGTGTTTCAAAGTTCTGGCCTAGCACAGGACGTGTAGATAATGTGTACGGTGACCGTAACCTCATTTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCCACAGCCTAG 3189 0.4754 MERARRLANRAILKRLVSEAKQYQKNESVLHSSTTPMLLYSSSRCMSSVSSPVLRSRGSKSENLLGRNTSITHMSRGAVGGFLGVGSTRSVSVEALQRSDTFPRRHNSATPEEQGKMAESCGFESLDSLVDATVPKSIRLKEMKFGKFDAGLTESQMIEHMKDLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNHIQKGKKKTFVIASNCHPQTIDVCETRAAGFDLKVVTADLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHAHEVKVVMASDLLALTVLKPPGELGADIVVGSTQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKTALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKNIAQRVHGLAGVFAHGLKKLGTVEVQDLPFFDTVKVKTSNAHAIADAALKSEINLRVVDGHTITVAFDETTTLEDVDKLFKVFAGGKPVSFAAASIAPEVQSVIPSGLARKSPYLTHPIFNTYQTEHELLRYMHRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPNFADIHPFAPLDQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVATGGIPAPDKPQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKQTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADINNNVLKGAPHPPSLLMADAWTKPYSREYAAFPASWLRVSKFWPSTGRVDNVYGDRNLICTLLPASQAVEEQAAATA 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0402 1062 MobiDBLite consensus disorder prediction 97 116 - -
Ssu5g0402 1062 Gene3D Aspartate Aminotransferase, domain 1 865 1000 IPR015422 GO:0003824
Ssu5g0402 1062 TIGRFAM gcvP: glycine dehydrogenase 105 1046 IPR003437 GO:0004375|GO:0006544
Ssu5g0402 1062 Coils Coil 721 741 - -
Ssu5g0402 1062 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 1062 - -
Ssu5g0402 1062 CDD GDC-P 574 969 IPR020581 GO:0004375|GO:0006546
Ssu5g0402 1062 Gene3D - 614 864 IPR015421 GO:0003824
Ssu5g0402 1062 Gene3D - 185 445 IPR015421 GO:0003824
Ssu5g0402 1062 CDD GDC-P 154 531 IPR020581 GO:0004375|GO:0006546
Ssu5g0402 1062 SUPERFAMILY PLP-dependent transferases 105 531 IPR015424 -
Ssu5g0402 1062 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 96 1053 IPR003437 GO:0004375|GO:0006544
Ssu5g0402 1062 Gene3D Aspartate Aminotransferase, domain 1 174 527 IPR015422 GO:0003824
Ssu5g0402 1062 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 1062 IPR020581 GO:0004375|GO:0006546
Ssu5g0402 1062 Pfam Glycine cleavage system P-protein 105 531 IPR020581 GO:0004375|GO:0006546
Ssu5g0402 1062 Pfam Glycine cleavage system P-protein 548 824 IPR020581 GO:0004375|GO:0006546
Ssu5g0402 1062 SUPERFAMILY PLP-dependent transferases 570 1047 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0402 Ssu-Chr5 8442537 8448670 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0402 K00281 - gmx:100819714 2007.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0402 5 8442537 8448670 Ssu1g3638 1 91980481 91984056 PCT