Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3638 ATGATCCCTCTTGGATCTTGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCTAACATTCACCCTTTTGCACCAATTGAACAGGCTCAAGGTTATCAAGAAATGTTCGAAAATTTGGGTAACCTGTTGTGCACAATCACTGGGTTTGACTCCTTCTCTTTGCAACCTAATGCTGGGGCTGCTGGTGAATATGCTGGACTAAtggttattcgtgcatatcatTTGGCAAGAGGAGACCACCACCGCAATGTTTGCATTATACCTGTCTCAGCACATGGTACAAATCCTGCCAGTGCTGCTATGTGTGCAATGAAAATTGTATCTGTCGGAACTGATGCCAAGGGAAACATCAATATTGAAGAGTTGAGGAAGGCCGCTGAAACTCATAAGGACAACTTATCTGCACTTATGgTGACATATCCTTCAACCCATGGTGTTTACGAAGAAGGTATTGATGAGATATGCAAGATTATTCATGATAACGGAGGTCAAGTATATATGGATGGTGCTAACATGAATGCACAGGTTGGACTTACCAGCCCAGGTTGGATCGGAGCAGATGTTTGCCACCTGAATCTCCATAAGACATTTTGCATCCCCCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGtgGTTCCCACGGGTGGCATTCCTGCCCCTGACAAGTCGCAGCCACTTGGTACCATTTCTGCTGCACCATGGGGCTCAGCACTGATATTGCCTATCTCATACTCTTACATAGCCATGATGGGTGCTAAAGGACTCACCGAAGCATCAAAAATAGCCATTTTGAATGCAAACTATATGGCAAAACGATTGGAGAATCATTACCCTGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTGAGAAGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCAAAGCGCCTTATGGACTATGGCTTTCATGGACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAACCCACTGAGAGTGAAAGCAAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGACAAGAAATTGCTGAGATTGAGAAAGGAAAGGCTGACATTAGCAACAATGTACTTAAGGGAGCCCCTCACCCACCGTCACTGCTCATGGGAGATGCATGGACAAAACCGTACTCTCGAGAATATGCAGCCTTCCCAGCTTCCTGGCTCCGTGTTTCTAAGTTCTGGCCTTCCACAGGACGTATTGATAATGTGTACGGTGACCGCAACCTCGTTTGCACCCTTCTCCCAGCATCACAGGTTGTTGAAGAACAAGCTGCTGCAACGGCCTAA 1401 0.4497 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPIEQAQGYQEMFENLGNLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCAMKIVSVGTDAKGNINIEELRKAAETHKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKSQPLGTISAAPWGSALILPISYSYIAMMGAKGLTEASKIAILNANYMAKRLENHYPVLFRGVNGTVAHEFIIDLRSFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKLDRFCDALISIRQEIAEIEKGKADISNNVLKGAPHPPSLLMGDAWTKPYSREYAAFPASWLRVSKFWPSTGRIDNVYGDRNLVCTLLPASQVVEEQAAATA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3638 466 CDD GDC-P 1 373 IPR020581 GO:0004375|GO:0006546
Ssu1g3638 466 Gene3D - 19 248 IPR015421 GO:0003824
Ssu1g3638 466 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 466 - -
Ssu1g3638 466 SUPERFAMILY PLP-dependent transferases 3 451 IPR015424 -
Ssu1g3638 466 Pfam Glycine cleavage system P-protein 35 230 IPR020581 GO:0004375|GO:0006546
Ssu1g3638 466 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 466 IPR020581 GO:0004375|GO:0006546
Ssu1g3638 466 Gene3D Aspartate Aminotransferase, domain 1 267 404 IPR015422 GO:0003824
Ssu1g3638 466 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3638 Ssu-Chr1 91980481 91984056 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3638 K00281 - gmx:100795673 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0402 5 8442537 8448670 Ssu1g3638 1 91980481 91984056 PCT