Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0388 ATGGCCGATTCAACCTCAAGCGATTCACTCTCCCTAGACATCGATTCCTTCTCTCCCTCACCCCAgGAACATATCATCAGAACACTTCATGGTTCCATATCTGTCGCTGTATATGGAGACCAAGATAAGCCAGCTCTTATCACATATCCTGATCTGGCTTTAAATTATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCGTATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGTCATGAGTTAGGAGCTGCTGCAATTGATCCACATTACCCAATTCTTTCTGTAGATGACTTGGCTGATCAAATAGCAGAGGTTCTCAACTTTTTTGGTCTTACTTCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCTATGAAATATAGACAACATGTTCTTGGGTTGATACTTGTTTCTCCTCTATGTAAAGAACCATCTTGGACTGAATGGTTGTACAACAAGGTTATGTTGAATTTACTATACTTTTATGGCATGTGTGGGGTGGTAAAGGAAATATTGCTGAAGCGGTACTTTAGTATGGAAATTCGTGGTGGTCCTCAATTGCCAGAGTCAGATATAGTTAAAGCATGCCGAAGGTTGTTGGATGAGAGGCAGTGTCTGAATGTGTGGCGGTTCCTGGAAGCTATTAACGGGAGACCTGACATAAGTGAAGGGTTAAGAAATTTACATTGCCgttcacttatttttgttggGGATATGTCACCATTTCACTCGGAGGCTCTTCACATGACTTCAAAATTAGACAGACGATTCAGTGCCTTAGTTGAGGTTCAAGCATGTGGGTCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTAATACCAATGGAGTACTTTCTTATGGGATATGGCTTGTACAAGCCATCCAAGCTGAGTGTCAGCCCAAGAAGCCCCTTGAGCCCATCTTGCATTTCTCCCGAGCTTTATTCACCAGAGAGTATGGGTTTGAAATTGAAACCCATAAAGACACGAATTTCTGTGGAAATCTAG 1050 0.4171 MADSTSSDSLSLDIDSFSPSPQEHIIRTLHGSISVAVYGDQDKPALITYPDLALNYVSCFQGLLFCPEAYYLLLHNFCIYHISPPGHELGAAAIDPHYPILSVDDLADQIAEVLNFFGLTSVMCMGVTAGAYILTLFAMKYRQHVLGLILVSPLCKEPSWTEWLYNKVMLNLLYFYGMCGVVKEILLKRYFSMEIRGGPQLPESDIVKACRRLLDERQCLNVWRFLEAINGRPDISEGLRNLHCRSLIFVGDMSPFHSEALHMTSKLDRRFSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYKPSKLSVSPRSPLSPSCISPELYSPESMGLKLKPIKTRISVEI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0388 349 Pfam Ndr family 23 306 IPR004142 -
Ssu5g0388 349 PANTHER PROTEIN NDL2 5 349 - -
Ssu5g0388 349 PANTHER N-MYC DOWNSTREAM REGULATED 5 349 IPR004142 -
Ssu5g0388 349 Gene3D alpha/beta hydrolase 18 302 IPR029058 -
Ssu5g0388 349 SUPERFAMILY alpha/beta-Hydrolases 32 300 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0388 Ssu-Chr5 8236045 8244102 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0388 - - gmx:100815084 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0388 5 8236045 8244102 Ssu5g0388 5 8236045 8244102 ECH
Ssu5g0388 5 8236045 8244102 Ssu1g3642 1 92033715 92036223 PCT