Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3440 ATGAAGGAGGAGTTGGTGGTACAAGAAGGGTACGTTTTCAAAGAAGAGACCCACCTCACAGTGCTCAAAACCTCTCTCTTCTTCAACGGTGACGGCTTCACCGTGTACGATTGCAAGGGCCAACTCGTCTTCCGCTTCGACACCTATGGTCCCCGCGCTCGCGACAAGGACGAACTTGTTCTCATGGATCCCCATGGCCGTTCTCTTCTCACCCTCCGCCGAAAGAAACCGAGTCTTCATCAACGGTGGGACGGGTTCAAAGGGGAGAGAACGGAGGGTGATAAACCGGTGTTCAGCGTGAAGAGATCGTCGATCATCGGACGGTCGCGGACGAGCGTGGCGGTGGAGGTGTACGATAACCCCGGTGTGGAGTACCTCATCGAAGGGTGCTTCCCGCAGCGGTGCTGCAAGGTTTTCAATGCCGCCAAGGAATTAGTGGCTGAGATTCGTCGCAAAGTGGACTCCACCACCAGCGTTATGCTCGGCAAGGAAGTCTTTTGGCTTTGCGTTAAGCCTGGTTTTGACGGGGCCTTTGCCATGGGATTGGTTTTGGTACTTGATCAGATCAACGGTGAGAATTACTTTGATGATAGAATTCCCGAGCCCGCGGTGCATCCCGCTACAGAAGATCCAGGACTTGTTTCACCCGTTCCATAA 657 0.5388 MKEELVVQEGYVFKEETHLTVLKTSLFFNGDGFTVYDCKGQLVFRFDTYGPRARDKDELVLMDPHGRSLLTLRRKKPSLHQRWDGFKGERTEGDKPVFSVKRSSIIGRSRTSVAVEVYDNPGVEYLIEGCFPQRCCKVFNAAKELVAEIRRKVDSTTSVMLGKEVFWLCVKPGFDGAFAMGLVLVLDQINGENYFDDRIPEPAVHPATEDPGLVSPVP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3440 218 Pfam LURP-one-related 6 185 IPR007612 -
Ssu4g3440 218 PANTHER - 4 202 IPR007612 -
Ssu4g3440 218 SUPERFAMILY Tubby C-terminal domain-like 5 190 IPR025659 -
Ssu4g3440 218 Gene3D - 4 194 IPR038595 -
Ssu4g3440 218 PANTHER LURP-ONE-LIKE PROTEIN 4 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3440 Ssu-Chr4 85024986 85026004 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3440 - - gmx:100783735 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3440 4 85024986 85026004 Ssu4g3440 4 85024986 85026004 ECH
Ssu8g0112 8 1826047 1826988 Ssu4g3440 4 85024986 85026004 PCT