Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3406 ATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCcgcttcttcttcctcttctttcacTCCCCAATTTGCttccgccgccgccgccgccagATTCGCTGCTCTTCCTCGCTCCTCCCGCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGATATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAATCACCTGCCATTGTTAAATCTTACTATGACAAAAGGATTGTTGGATGCCCAGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCAGTGTGCGCACAGTATTTTGTTATGGCTGAAATGTCACCACCTTTGCCATGCTCGTTTTGTGATGCAAGACCCGCAACAAGCAAGGTGGCCACAAGGGTGGCCGCGATGGCGTTTCTCGCGGCCTTTGCATCGCAACACAATGCTGTCACGATTGCGTTTCCGGTGAAACCCTCTACGCTATACTGTTATTGCACGTCAATAACTGATATTTAA 624 0.4583 MLRRLLSSHLKTLAASSSSSFTPQFASAAAAARFAALPRSSRYFSTQSEDATAIKKKVEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKESPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVMAEMSPPLPCSFCDARPATSKVATRVAAMAFLAAFASQHNAVTIAFPVKPSTLYCYCTSITDI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3406 207 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B 1 150 - -
Ssu4g3406 207 CDD Cyt_c_Oxidase_Vb 53 151 IPR002124 GO:0005740|GO:0005751|GO:0006123
Ssu4g3406 207 Gene3D Cytochrome c oxidase, subunit Vb 54 149 IPR036972 GO:0005740|GO:0005751|GO:0006123
Ssu4g3406 207 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 150 IPR002124 GO:0005740|GO:0005751|GO:0006123
Ssu4g3406 207 SUPERFAMILY Rubredoxin-like 54 150 - -
Ssu4g3406 207 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 53 152 IPR002124 GO:0005740|GO:0005751|GO:0006123
Ssu4g3406 207 Pfam Cytochrome c oxidase subunit Vb 64 150 IPR002124 GO:0005740|GO:0005751|GO:0006123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3406 Ssu-Chr4 84677579 84688297 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3406 K02265 - gmx:100819356 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0148 8 2153989 2156749 Ssu4g3406 4 84677579 84688297 PCT