Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3395 ATGTCCGGTTTCGGCGTCATAAATAAATTCGGTAGCATAAGAGTTGGGATTGATATTCCAACAATTGAAGTTCGATATGAGCACCTAAATGTTGAGGCAGAGGCTTACGTGGGAAGCAGGGCTTTGCCAACTTTTCTGAACTTTGTTACTAATATGGTGGAGAGTTTCTTTACTTCTCTCCATATTCTCTCAGGCAAAAAGAAACATGTGACTATCCTTAAAGATGTTAGTGGAATCATCAAACCTCGCAGGATGGCACTACTTCTAGGTCCTCCAAGTTCAGGAAAGACCACACTCCTTTTGGCCCTATCTGGAAAACTTGATCCAAGTCTAAAGCTATCAGGGAGAGTGACTTATAATGGGCATGGAATGAACGAGTTTGTTCCTCAGAGAACAGCTGCATATATTAGCCAGCATGATGTTCATATTGGAGAAATGACAGTGAGGGAAACCTTGGCATTCTCAGCGAGGTGCCAAGGGGTTGGAACACGTCATGACTTGCTATCTGAGTTGGctagaagagaaaaagaagcaaAGATCAAGCCAGACCCGGATATTGACGTCTACATGAAGGCAGCTGCAACTGGAGGCCAGGAGGCAAGTCTggtaacagattatgtactgaaGATTTTGGGGTTGGATATATGTGCTGATACAATAATGGGGGATGAAATGCTGCGCGgctataacaaaattttagtgTACACGTTGTTCAAGCAGTACCTTGTGCTATTACTGATAAACCAAATGTCTTCTGGATTGTTCCGAGCTATTGCAGCACTTGGTAGGAACATGATTGTGGCTGGCACATTTGGGAGCTTTGCACTTCTCGTTCTTTTTGCATTGGGTGGTTTCATTCTATCAAGAAATGATATCAAGGACTGGTGGATTTGGGGTTACTGGATTTCACCTTTAATGTATGGACAGAATGCAATAATGGTGAATGAATTCCTTGGGAATAGTTGGAACCACTTCACCCCAAATTCAAATAAGACCTTGGGAATTCAAATTTTGGAGTCCCGTGGGTTCTTCACACATGCATATTGGTATTGGATAGGAATTGGGGCATTGATTggatttatgttccttttcaaCATTATATACACTTTGGCTCTCGCTTACCTAAATCCATTTGAGAAGCCACAGACAGCAATAACTGAAGAATCAAAAGGTGGTATGCCTGATCGGAGAGCCCGAGAAGACGAATTAACACGCTTAGTAATGTGGTCCAAAGCAATTTACAAAGTTAATGTTCTGTACACCAATCAAGAGAATTGGCTTTCTGAACTTGAGAGACTGATCGCGAGAAATAAGCAACTTATAGCAGAACTAGGCAACCCCGCTCCTGGTTCAAAAGATCTTCATTTTCCTACTCAatactctcaatcacttcttGTCCAATGCCTAGCTTGCTTATGGAAACAACATTGGTCATATTGGCGCAATCCGCCATACACTGCTGTGAGATTTCTTTCAACTACTGTCATAGCCGTGATGTTTGGAACAATGTTTTGGGGCCTTGGAGGCAAATACTCAAGCAGACAAGACCTATTTAATGCCATCGGTTCAATGTATAACGCTGTTCTTTTCATGGGGATCCAAAATTCTACTTCCGTACAACCAGTAGTAGCCATTGAAAGAACTGTCTTTTATAGAGAAAGAGCTGCTGGAATGTATTCTGCCTTGCCTTATGCAATTGCACAAGTTATAATAGAGCTACCTTACATTTTTGTGCAAGCTACATCATATTCTGTCATAGTTTATGCCATGATGGGATTTGAATGGACTATAGGGAAGTTCTTTTGGtacatttttttcatgtacTTCACATTGTGCTACTACACGTTCTATGGCATGATGGCTGTGGCAATTACCCCAAATCACCATGTTGCTTCAGTTGTGTCTGCTGCATTTTATGGAATTTGGAACCTCTTTTCAGGATTTGTCATTGCACGACCTAGCATTCCTGTGTGGTGGAGGTGGTACTACTGGGCATGTCCCGTGGCCTGGACCATATACGGGTTGGTAGCCTCGCAGTTTGGAGATATAACCAATGTGATGAAATCAGAAAATAAGTCAGTTCAAGAATTCATAAGAAGTTATTTTGGTATCAAACATGACTTCATAGGAGTTTGTGCAATTATGGTTTCTGGGTTTGCTGTGctatttgttcttatttttgcTGTCTCAATCAAGGCCTTCAACTTCCAAAGGCGATAG 2220 0.3968 MSGFGVINKFGSIRVGIDIPTIEVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILKDVSGIIKPRRMALLLGPPSSGKTTLLLALSGKLDPSLKLSGRVTYNGHGMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGTRHDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLVTDYVLKILGLDICADTIMGDEMLRGYNKILVYTLFKQYLVLLLINQMSSGLFRAIAALGRNMIVAGTFGSFALLVLFALGGFILSRNDIKDWWIWGYWISPLMYGQNAIMVNEFLGNSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMFLFNIIYTLALAYLNPFEKPQTAITEESKGGMPDRRAREDELTRLVMWSKAIYKVNVLYTNQENWLSELERLIARNKQLIAELGNPAPGSKDLHFPTQYSQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVIAVMFGTMFWGLGGKYSSRQDLFNAIGSMYNAVLFMGIQNSTSVQPVVAIERTVFYRERAAGMYSALPYAIAQVIIELPYIFVQATSYSVIVYAMMGFEWTIGKFFWYIFFMYFTLCYYTFYGMMAVAITPNHHVASVVSAAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWTIYGLVASQFGDITNVMKSENKSVQEFIRSYFGIKHDFIGVCAIMVSGFAVLFVLIFAVSIKAFNFQRR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3395 739 Coils Coil 423 443 - -
Ssu4g3395 739 Pfam Plant PDR ABC transporter associated 322 385 IPR013581 -
Ssu4g3395 739 Pfam ABC-2 type transporter 467 680 IPR013525 GO:0016020|GO:0140359
Ssu4g3395 739 Pfam ABC-2 type transporter 237 317 IPR013525 GO:0016020|GO:0140359
Ssu4g3395 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 181 IPR027417 -
Ssu4g3395 739 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 14 229 - -
Ssu4g3395 739 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 432 739 - -
Ssu4g3395 739 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 234 404 - -
Ssu4g3395 739 PANTHER ATP-BINDING CASSETTE TRANSPORTER 234 404 - -
Ssu4g3395 739 PANTHER ATP-BINDING CASSETTE TRANSPORTER 14 229 - -
Ssu4g3395 739 PANTHER ATP-BINDING CASSETTE TRANSPORTER 432 739 - -
Ssu4g3395 739 Gene3D - 60 221 IPR027417 -
Ssu4g3395 739 Pfam ABC transporter 73 175 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3395 Ssu-Chr4 84534280 84542072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3395 K08711 - gmx:100783377 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0161 8 2422811 2429362 Ssu4g3395 4 84534280 84542072 PCT