Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3384 ATGGAGGATTGTAACAACAAAGGAGAAGTTCATGCAAATTTCACTAAGCAGCCTTTATCAAGATCAGTTACCACTTTGAAATCTACCTTAACACCAAGAAGAGAAAGCAAAGGTGGTGCACAGCGCTTTGGGAGCAACCGGTTACTGTTGTGGTTGTTTCTGATTACCCTTTGGGCTTATCTTGGATTTTGTGTTCAGTCCAGGTGGGCACATGATGATAAGGAGGAGGAATTTTCAGGCTTTGAAAGCAGGCCGAGGGATACAACAAATTCACATGTTGAACAGAATCAGCATCATGATTTGATTGCCAAAAACATATCCTTATCTGTTAATATTGAAATAGTTGGGAACAAAACAATGGATGTGGCTTTGGCCAAGAAAGAATATGGTGTTCTATCTCAACTTAAGGCTAGCTCAAGGAAAAGGAGAAGGCGATCAATGCGTGCTTTGAGAGGTAAGAGGAAGCGAAAACATAGAGTAGAGAGCAGTGGTATAGAGGAACAAGAGCCAGGAATTCCCCAAGGGAATGCTACCTATGGATTCCTTGTTGGTCCATTTGGCTCAATAGAGGATAGAATTCTGCAATGGGGTCCTCGGAGGCGTTATGAAACCTGCGTCAGGAACGGGGACTTTGTGCGCCTTGTTCGGTCAAGAAGGTTTGTCCTGATATTTCATGAGCTCTCCATGACTGGGGCTCCACTTTCAATGATGGAGTTGGCAACTGAACTCTTGAGTTGTGGGGCTTCTATTTCAGCTGTGGTGCTTAGCAGGAAGGGTGGTTTGATGCAAGAACTTGCTAGGAGACAAATCAAGGTGCTTGAAGACAAAGCATATCTCAGCTTCAAAACTTCAATCAAGGCAGATCTTGTCATTGCTGGATCAGCCGTCTGTGCATCATGGATTGAACAATACATTGAACATTTTCCCGCTGGTGCAAGTCAAGTTGCTTGGTGGATTATGGAAAACAGACGAGAGTACTTTGATCGTGCAAAGGATGTGTTGCACAGAGTGAAGATATTGGTCTTTCTTTCTGAATCGCAATCTAAGCAATGGCAAAAATGGTGTGAAGAAGGTGGCATAAAACTGAGATCACAACCTGCACTTGTTCCATTGTCTGTCAATGATGAACTAGCTTTTGTAGCTGGCATGCCCTCTACAGTTAACACTCCACCATTCAGTGCTGAGAAAATGGATGAGAGGAGGAAGTTGTTGCGAGATTCAATCCGAAGAGAAATGGGGTTAACTGATAATGATATGCTTGTTATGACTCTGAGTAGTATCAACCGTGGAAAGGGTCAGCTATTGCTTCTTGAATCAGCAAGCTCAATAGTAGAACATGGACCATTGCAACATTATAAGAAAATGCCAAATTCATCAGATGATGGAGAATACCTATCTACCTTGGCTAGAAAGCATCATATTAGAAAATTGTTGAAGGAAAGCAGTGTAGCCTTGAACAATATCTCAAGCAATTTTATAAACAGAAGGGAAGTGTTGTCCCACAACGACGGAACAATGGCACAAACTCTCAAAATTCTCATTGGTTCTGTGGGATCCAAGAGTAACAAGGTGGATTATGTTAAAGGTCTTCTAAGTATCTTAGCAAAGCATTCAAACATGTCAAAGTCAGTTTTGTGGACCTCAGCCACAACACGTGTCGCCTCACTTTACTCTGCTGCAGATGTTTATGTCATAAACTCTCAGGGACTGGGAGAAACATTTGGTCGGGTGACTATAGAAGCAATGGCATTTGGTCTTCCGGTGCTTGGAACTGATGCTGGGGGAACGCAAGAAATTGTTGAGCATAATGTGACAGGTCTTCTTCATCCTATTGGACGCCCAGGGAATCATGTCCTTGCACAGAATCTCCGGTTTTTACTTGAAAACCGATTGGCAAGAGAGCAAATGGGGATTGAAGGGAGAAAGAAGGTGCAGAGGATGTTCTTGAAGCAGCACATGTATGAGAAATTTGTAGAGGTTCTTGTCATGTGCATGAGAAGCAAATAA 2007 0.4275 MEDCNNKGEVHANFTKQPLSRSVTTLKSTLTPRRESKGGAQRFGSNRLLLWLFLITLWAYLGFCVQSRWAHDDKEEEFSGFESRPRDTTNSHVEQNQHHDLIAKNISLSVNIEIVGNKTMDVALAKKEYGVLSQLKASSRKRRRRSMRALRGKRKRKHRVESSGIEEQEPGIPQGNATYGFLVGPFGSIEDRILQWGPRRRYETCVRNGDFVRLVRSRRFVLIFHELSMTGAPLSMMELATELLSCGASISAVVLSRKGGLMQELARRQIKVLEDKAYLSFKTSIKADLVIAGSAVCASWIEQYIEHFPAGASQVAWWIMENRREYFDRAKDVLHRVKILVFLSESQSKQWQKWCEEGGIKLRSQPALVPLSVNDELAFVAGMPSTVNTPPFSAEKMDERRKLLRDSIRREMGLTDNDMLVMTLSSINRGKGQLLLLESASSIVEHGPLQHYKKMPNSSDDGEYLSTLARKHHIRKLLKESSVALNNISSNFINRREVLSHNDGTMAQTLKILIGSVGSKSNKVDYVKGLLSILAKHSNMSKSVLWTSATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGLPVLGTDAGGTQEIVEHNVTGLLHPIGRPGNHVLAQNLRFLLENRLAREQMGIEGRKKVQRMFLKQHMYEKFVEVLVMCMRSK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3384 668 MobiDBLite consensus disorder prediction 139 158 - -
Ssu4g3384 668 Pfam Glycosyl transferases group 1 534 642 IPR001296 GO:0016757
Ssu4g3384 668 Pfam Glycosyl-transferase family 4 217 385 IPR041693 -
Ssu4g3384 668 PANTHER BNAA05G14870D PROTEIN 20 668 - -
Ssu4g3384 668 CDD GT4_PimA-like 219 661 - -
Ssu4g3384 668 MobiDBLite consensus disorder prediction 139 173 - -
Ssu4g3384 668 Gene3D Glycogen Phosphorylase B; 392 648 - -
Ssu4g3384 668 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 225 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3384 Ssu-Chr4 84241154 84244440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3384 10 666 Glycosyltransferase AT1G52420 58.457 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3384 - - gmx:100796443 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3384 4 84241154 84244440 Ssu4g3384 4 84241154 84244440 ECH
Ssu8g0177 8 2691913 2695658 Ssu4g3384 4 84241154 84244440 PCT