Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3372 atggcgAAGGCATTCTCGTCAAACTCAAAATATCCAGAAAACTACGTCGTTTTAAGGAGGTTTTGCTGCTTGAAGTTGACGGTGGGTGTGGTGGTGTGTCTGGCGTGCGTGTTCGTACTGTGGCCGTGGAATCCAGAGCTGATGATCGAACGGCTGAACGTGAAGCGTGTGAAGGTGCATCCTATACCGCCGGTAACCGCTGACGTGTGGATATCGCTGTCGGTGAGGGTGCAGAACCGTGACATTTACTGGCTGGAGCTGACGGAGGTTGACGTCGGGGTGAAGTACAGAGGGAAGAAGATGGGTCACGTGGAATCGGAGGGTTGGCACGTGAGGGGGTGGGCGTCCTCACACGTGGACGGAGAGCTTGAGTTTAGTGGGCTTCCCTCGTCCGAGGTGGCCCATTTGCTGGAGGACCTCGCCAAGGGCCGGGTCTACTTTCACACTGTTGTCGAGGTCTCGGGACAACTGGGCTTTCTCTTGCTTCGCCTCCCTTATATGTTCAAGACAGTACTGGCATGTGAGATTTTGGTCAATACAAAAAACCATTCAATTATTCTTCAACACTGTCTTCACAAGGACTAA 585 0.5214 MAKAFSSNSKYPENYVVLRRFCCLKLTVGVVVCLACVFVLWPWNPELMIERLNVKRVKVHPIPPVTADVWISLSVRVQNRDIYWLELTEVDVGVKYRGKKMGHVESEGWHVRGWASSHVDGELEFSGLPSSEVAHLLEDLAKGRVYFHTVVEVSGQLGFLLLRLPYMFKTVLACEILVNTKNHSIILQHCLHKD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3372 194 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 21 193 - -
Ssu4g3372 194 PANTHER EXPRESSED PROTEIN 21 193 - -
Ssu4g3372 194 SUPERFAMILY LEA14-like 38 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3372 Ssu-Chr4 84134799 84138880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3372 - - gmx:100815479 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3372 4 84134799 84138880 Ssu4g3372 4 84134799 84138880 ECH
Ssu8g0193 8 2888035 2888748 Ssu4g3372 4 84134799 84138880 PCT