Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3297 ATGCTTTTCATTCAAGCATCTCTGTCTGTTTCTAGCATTCTCTTCTGTGTTCGACCGACTTACGTTGGAGTAGTACACGTATGTTGCGGTGAACCAACCCACGTGTGTCTTTGGCCGTTGGATTCATCATCAACGGCAACAAACACATCATCCACTGTGGCTGTGTTCCCTTGTGAGACCAACCTCAATGGAAACAACTCTTCTATTTCAACTTCTGCTTCAATCAGATTCCTCAGCTTTGATCCCACCAACACACAATTCTACTTTCCCTTCCCTGGCATTGCTATTACTTACGCAACCTTCTCTTCAAACTCAACTTGTGATTCCATTTCCACCATCATCATGATGCCTAATTCTGAACCCAAGATCATCACTGGACTTGCTGGCTATGTCCTTGAAGATGTTCCTCATCTATCTGACTACATCCCTCACCTCACTACATATCCTAATCCGTTGCAAGACAATCCTTCCTATTCAGTTGTTAAGCAGTATTTTGTTGATGTGGATGATACTGTTGCGCAACAGATAGTTGTACATAAGAATAGCCCAAGAGGGACACATTTTCGCCGTGCCGGGCCTCGTCAGAAGGTATATTTTGAGTCCAAGGATGTGTATGCTTGTATTGTCACGTGTGGAGGTCTTTGTCCTGGTGTAAATACAGTGATCAGAGAAATAGTTTGCGGGTTATACCATATGTATGGGGTGCACAAAGTCCTGGGAATAGAGGGAGGGTATAGAGGTTTTTATTCTCGAAATACAATTCCATTGACACCAAAGTTTGTGAATGACATCCACAAACGTGGTGGAACCATCCTTGGTACCTCACAAGGAAAAGGAGGCCATGATACCTCAAAGATTGTTGATAGCATTCAGGATAGGGGAATCAATCAGGTTTACATACTTGGAGGAGATGGAACTCAGAAAGGAGCCTCTCTGATTTCTGAGGAAATTAGAAGACGTGGCTTGAAAGTTTCAGTGGTTGGAATTCCAGAATCTGTCGATAATGATATCCCAGTTATTGACAAGTCATTTGGTTTTGACACTGCTGTTGAAGAGGCACAACGAGCCATAAATGCTGCTCATGTGGAAGCAGAAAGCACTGAGAATGGCATTGGTCTTGTCAAGCTAATGGGTCGTTACAGTGGATTTATAGCTATGTATGCAACTCTCGCCAGCCGAGATGTGGATTGTTGCTTAATTCCAGAGTCACCCTTTTACCTTGAGGGTCCAGGTGGACTCTTTGAGTTCATTAGGAAAAGACTCACAGAAAATGGGCACATGGTTATAGTAATAGCTGAAGGTGCAGCTCAAGAGCTTATTTCGGAAAGCCTATCTGGTATGAATAAGCAGGATGCTTCTGGCAACAAGTTACTTCAAGATGTTGGTCTTTGGTTATCCCAGAAGATTAAGGATCACTTcacaaaaagtcaaaaaatggCTATAACTCTGAAGTACATTGATCCCACATACATGATCCGTGCTGTTCCAAGTATTGCATCTGATAATGTATATTGCACTCTCCTTGCTCAAAGTACTGTTCATGGTGCAATGGCTGGATACACAGGCTTCACAGTTGGTGCGGTCAATGGCAGACATTCTTATATTCCATTTTATCGGATAAATGAGAGTCAGAAGAAGGTTGTTATAACTGATCGCATGTGGGCAAGGTTACTGTCTTCAACCAATCAACCTAGCTTCTTGAATCCTAAAGATATCACTTCACAAACAGAACAAAGAACGGAACACCACTCATCGAACAGGGAACGACTGTGA 1773 0.4236 MLFIQASLSVSSILFCVRPTYVGVVHVCCGEPTHVCLWPLDSSSTATNTSSTVAVFPCETNLNGNNSSISTSASIRFLSFDPTNTQFYFPFPGIAITYATFSSNSTCDSISTIIMMPNSEPKIITGLAGYVLEDVPHLSDYIPHLTTYPNPLQDNPSYSVVKQYFVDVDDTVAQQIVVHKNSPRGTHFRRAGPRQKVYFESKDVYACIVTCGGLCPGVNTVIREIVCGLYHMYGVHKVLGIEGGYRGFYSRNTIPLTPKFVNDIHKRGGTILGTSQGKGGHDTSKIVDSIQDRGINQVYILGGDGTQKGASLISEEIRRRGLKVSVVGIPESVDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESTENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGPGGLFEFIRKRLTENGHMVIVIAEGAAQELISESLSGMNKQDASGNKLLQDVGLWLSQKIKDHFTKSQKMAITLKYIDPTYMIRAVPSIASDNVYCTLLAQSTVHGAMAGYTGFTVGAVNGRHSYIPFYRINESQKKVVITDRMWARLLSSTNQPSFLNPKDITSQTEQRTEHHSSNRERL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3297 590 MobiDBLite consensus disorder prediction 575 590 - -
Ssu4g3297 590 SUPERFAMILY Phosphofructokinase 139 571 IPR035966 GO:0003872|GO:0006096
Ssu4g3297 590 MobiDBLite consensus disorder prediction 566 590 - -
Ssu4g3297 590 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 135 567 IPR012004 GO:0003872|GO:0005524|GO:0006096
Ssu4g3297 590 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 109 581 - -
Ssu4g3297 590 PANTHER - 109 581 - -
Ssu4g3297 590 Pfam Phosphofructokinase 207 514 IPR000023 GO:0003872|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 345 363 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 208 227 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 327 344 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 423 435 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 294 310 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 PRINTS ATP-dependent phosphofructokinase family signature 366 382 IPR022953 GO:0003872|GO:0006002|GO:0006096
Ssu4g3297 590 Gene3D - 201 392 - -
Ssu4g3297 590 Coils Coil 587 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3297 Ssu-Chr4 83107917 83112741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3297 K00850 - gmx:100796614 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0266 8 3963762 3968414 Ssu4g3297 4 83107917 83112741 PCT