Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3029 ATGGACAAAGGTATACCTCCTCGCTTCAGACCCAACGCTCCCAAACGTGAACACTGCATATGCATCACCGTTTTCCTCCTTTTACTTGGCATCATAATCCTCATCCTCTGGCTTGCCTACCACCCTTCCAAGCCGCGCTTCACGGTGGCCAGCGCCGCCGTCTACGGCCTCAACGCCACCTCGCCGCCGCTCATGTCCATCACCATGCAATTCAACGTCCTCATAAGGAACCCCAACAAGCGTGTCTCAATTTACTTCGACAGGCTCTCCACTTATGTGTCCTACAGAAACCAACCCATCACGCCGCATGTCATGCTCCCGCCACTCTTCCTAGAGAAGCACAGCGCCGTGTCGCTGTCGCCGGAGATCGGTGGCGTGCCGGTGCCGGTGTCCGAGGAGGTCTCCAATGGATTGGCAATGGACGAGACATATGGGGTGGTGGGTGTGAAACTTGTGTTCCTTGGAAGGTTGAGGTGGAAAACTGGTGACATAAACTCTGCACATTATGGCTTGTATGTGAAGTGTGACATATTGATGGGTTTGAAGAAAGGGTTTGTGGGTCAGGTTCCTCTTCTTGGAGCTCCAGTTTGCGACGTGGATACATGA 606 0.5347 MDKGIPPRFRPNAPKREHCICITVFLLLLGIIILILWLAYHPSKPRFTVASAAVYGLNATSPPLMSITMQFNVLIRNPNKRVSIYFDRLSTYVSYRNQPITPHVMLPPLFLEKHSAVSLSPEIGGVPVPVSEEVSNGLAMDETYGVVGVKLVFLGRLRWKTGDINSAHYGLYVKCDILMGLKKGFVGQVPLLGAPVCDVDT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3029 201 Pfam Late embryogenesis abundant protein 73 169 IPR004864 -
Ssu4g3029 201 PANTHER OS05G0367900 PROTEIN 3 201 IPR044839 GO:0098542
Ssu4g3029 201 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 3 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3029 Ssu-Chr4 77391638 77392243 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3029 - - gmx:100780333 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3029 4 77391638 77392243 Ssu4g3029 4 77391638 77392243 ECH
Ssu4g3029 4 77391638 77392243 Ssu4g0065 4 1147708 1148301 ECH