Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0065 ATGTCAAAGGGCAAAATTTCCGGTGGACCTCGACGTGCAGTGTGCACAGGCATCACCATCTTCCTCCTGTTAGCCGGCATCACACTCCTCGTCCTCTGGCTCGTGTACCGTCCCCACAAGCCCCGCTTCACGGTGGTCGGCGCCGCCATCTACGGCCTCAACACAACCGCCCCGCCGCTCATGTCCGCCACCATGCAGTTCTCCGTCATCATAAGGAACCCAAACAGGCGTGTCTCCATTTACTATGACAGGCTCTCCGCCTTCGTCTCCTACAGGAACCAGGCCATAACGCCGCAGGTTTTGCTACCTCCGCTGTACCAGGAGAAGCGCAGCTCGGTGTCTGTGTCGCCGGTGATCGGAGGCACGCCGGTGCCGGTGTCGGTGGAGGTGTCGAACGGGTTGACGGTGGACGAGGCTTATGGGGTGGTGGGTCTGAGGCTGATCTTTCAGGGCAGGGTGAGGTGGAAGGCTGGGGCCATCAGAACTGCGCATTATGGACTCTACGTCAAGTGCGACATAGTGATGGGTTTGAAGAAAGGTTTGGTGGGTCAAGTTCCTCTCCTCGGAGTTACACCCTGCGATGTGGATGTGTGA 594 0.5875 MSKGKISGGPRRAVCTGITIFLLLAGITLLVLWLVYRPHKPRFTVVGAAIYGLNTTAPPLMSATMQFSVIIRNPNRRVSIYYDRLSAFVSYRNQAITPQVLLPPLYQEKRSSVSVSPVIGGTPVPVSVEVSNGLTVDEAYGVVGLRLIFQGRVRWKAGAIRTAHYGLYVKCDIVMGLKKGLVGQVPLLGVTPCDVDV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0065 197 PANTHER OS05G0367900 PROTEIN 9 196 IPR044839 GO:0098542
Ssu4g0065 197 Pfam Late embryogenesis abundant protein 71 167 IPR004864 -
Ssu4g0065 197 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 9 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0065 Ssu-Chr4 1147708 1148301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0065 11 175 EF-hand Containing Proteins AT5G21130 23.810 2.99e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0065 - - gmx:100804161 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0065 4 1147708 1148301 Ssu4g0065 4 1147708 1148301 ECH
Ssu4g3029 4 77391638 77392243 Ssu4g0065 4 1147708 1148301 ECH