Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2986 ATGAACCAGGAAATGAATGGGGCTGAGGCTGAGAAGAGGCAGGAGAATGGACATGAGAAAATGGATTATGATGTGCaggagaaaatagattatgtgtTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGCAAGACTCAAATACTCTCAAGGTTTGCAAGGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAATTCCAGAGTAGGACTGTCACTATTAATGGAAAAGTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCCGTAACAAGTGCATACTACAGAGGTGCATTGGGGGCCATGTTGGTCTACGACATAACAAAAAGGCAATCGTTTGATCATGTTGCTAGGTGGGTTGAGGAACTGCGTGCACACGCAGATAGCTCCATTGTGATCATGTTAGTTGGGAACAAAGCTGACCTTGTGGACCTAAGAGTGGTGCCAACTGAAGATGCAGTGGAGTTTGCAGAGGACCAAGGCCTCTTCTTCTCTGAGACTTCAGCTCTCAGTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTGTCTAAAAAGGCATTGGAATGTGATCATGGGAAGGAGAATGGTGACAACCATATTACCTCACTCAAAGGAACAAAGGTTGATATAATCTCAGGTCCTGAATTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA 735 0.4367 MNQEMNGAEAEKRQENGHEKMDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFARNEFCFDSKSTIGVEFQSRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDLRVVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECDHGKENGDNHITSLKGTKVDIISGPELEISEMKKLSSCSC 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2986 244 ProSiteProfiles small GTPase Rho family profile. 26 197 - -
Ssu4g2986 244 SMART ran_sub_2 38 239 - -
Ssu4g2986 244 TIGRFAM small_GTP: small GTP-binding protein domain 32 186 IPR005225 GO:0005525
Ssu4g2986 244 Pfam Ras family 34 194 IPR001806 GO:0003924|GO:0005525
Ssu4g2986 244 SMART rho_sub_3 35 199 IPR001806 GO:0003924|GO:0005525
Ssu4g2986 244 CDD Rab11_like 30 193 - -
Ssu4g2986 244 PANTHER - 1 244 - -
Ssu4g2986 244 SMART arf_sub_2 21 197 - -
Ssu4g2986 244 ProSiteProfiles small GTPase Ras family profile. 27 227 IPR001806 GO:0003924|GO:0005525
Ssu4g2986 244 ProSiteProfiles small GTPase Rab1 family profile. 28 234 - -
Ssu4g2986 244 PANTHER RAS-RELATED PROTEIN RABA3 1 244 - -
Ssu4g2986 244 SMART rab_sub_5 33 196 - -
Ssu4g2986 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 196 IPR027417 -
Ssu4g2986 244 SMART ras_sub_4 30 196 - -
Ssu4g2986 244 Gene3D - 25 239 IPR027417 -
Ssu4g2986 244 PRINTS Transforming protein P21 ras signature 136 149 - -
Ssu4g2986 244 PRINTS Transforming protein P21 ras signature 56 72 - -
Ssu4g2986 244 PRINTS Transforming protein P21 ras signature 171 193 - -
Ssu4g2986 244 PRINTS Transforming protein P21 ras signature 74 96 - -
Ssu4g2986 244 PRINTS Transforming protein P21 ras signature 33 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2986 Ssu-Chr4 76225741 76227236 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2986 K07904 - gmx:100799439 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2986 4 76225741 76227236 Ssu4g2986 4 76225741 76227236 ECH
Ssu4g0100 4 1683716 1685758 Ssu4g2986 4 76225741 76227236 PCT