Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0100 ATGAATCAGGAAATGAATGGGGCTGAAGCTGAGAGAGTGAAAGAGAATGTGCATGACAAAATAGATTATGTGTTTAAGGTGGTGGTGATCGGGGACTCAGCAGTGGGTAAGACTCAAATGCTCTCAAGGTTTGCAAAGAATAAATTCTGCTTTGACTCAAAGTCCACCATTGGAGTTGAGTTCCAGACTAGAACTGTCACAATTAATGGCAAAGTCATCAAGGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCCGTGACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTGGTGTACGACATAACTAAAAGACAATCGTTTGATCATGTGGCTAGGTGGGTTGAGGAACTGCGAGCACACGCCGACAGCTCCATTGTGATCATGCTCATTGGGAACAAAGGTGACCTTGTGGACCAAAGAGTGGTACACGCGGAAGATGCAGTGGAGTTTGCAGAGGATCAGGGCCTCTTCTTTTCTGAGACTTCAGCTCTCAGTGGTGAGAATGTGGAGAGTGCCTTTTTCAAATTGCTGCAAGAGATCCACAGGGTAATCTCAAAAAGGTCATTGGAATGTGGTAATGGGAAGGCCAATGGTGACAACAATGTTGCCACTCTTAAAGGGTCAAAAATAGATATAATCTCAGGTGCTGAATTGGAAATTAGTGAGATGAAGAAGTTATCTTCATGTTCTTGTTAA 711 0.4473 MNQEMNGAEAERVKENVHDKIDYVFKVVVIGDSAVGKTQMLSRFAKNKFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVESAFFKLLQEIHRVISKRSLECGNGKANGDNNVATLKGSKIDIISGAELEISEMKKLSSCSC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0100 236 SMART ran_sub_2 30 231 - -
Ssu4g0100 236 TIGRFAM small_GTP: small GTP-binding protein domain 24 178 IPR005225 GO:0005525
Ssu4g0100 236 Gene3D - 17 221 IPR027417 -
Ssu4g0100 236 SMART rab_sub_5 25 188 - -
Ssu4g0100 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 190 IPR027417 -
Ssu4g0100 236 SMART ras_sub_4 22 188 - -
Ssu4g0100 236 PANTHER - 1 236 - -
Ssu4g0100 236 ProSiteProfiles small GTPase Rab1 family profile. 20 226 - -
Ssu4g0100 236 SMART rho_sub_3 27 191 IPR001806 GO:0003924|GO:0005525
Ssu4g0100 236 Pfam Ras family 26 186 IPR001806 GO:0003924|GO:0005525
Ssu4g0100 236 PANTHER RAS-RELATED PROTEIN RABA3 1 236 - -
Ssu4g0100 236 CDD Rab11_like 22 186 - -
Ssu4g0100 236 SMART arf_sub_2 6 189 - -
Ssu4g0100 236 ProSiteProfiles small GTPase Ras family profile. 19 236 IPR001806 GO:0003924|GO:0005525
Ssu4g0100 236 PRINTS Transforming protein P21 ras signature 48 64 - -
Ssu4g0100 236 PRINTS Transforming protein P21 ras signature 128 141 - -
Ssu4g0100 236 PRINTS Transforming protein P21 ras signature 25 46 - -
Ssu4g0100 236 PRINTS Transforming protein P21 ras signature 163 185 - -
Ssu4g0100 236 PRINTS Transforming protein P21 ras signature 66 88 - -
Ssu4g0100 236 ProSiteProfiles small GTPase Rho family profile. 18 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0100 Ssu-Chr4 1683716 1685758 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0100 K07904 - gmx:100787725 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0100 4 1683716 1685758 Ssu4g0100 4 1683716 1685758 ECH
Ssu4g0100 4 1683716 1685758 Ssu4g2986 4 76225741 76227236 PCT