Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2981 ATGGAAAGAGAGTTCGAGGACTTGCTGCCAGTGATGGCAGAGAAGCTTGATGTGGAGTCCTTTGTGTCTGAACTGTGTGGGGGGTTCAAGCTTCTAGCAGACCCAGAAATGGGTTTGATCACAAGCGAGAGTCTAAGGACAAACTCAGCTCTTCTGGGCATGGAAGGCATGAGCAAGGAGGATGCAGAGGCCATGGTTAGACAAGGTGATCTTGATGGGGATGGCAAGCTAAATGAAACTGAATTTTGCATTCTGATGGTGAGGCTTAGCCCTGGAATGATGGAAGATGCTGAGGCATGGCTGGAGAAGGCAATTGATGAAGAGCTTAGGAAGTCCTCAACTTAG 345 0.487 MEREFEDLLPVMAEKLDVESFVSELCGGFKLLADPEMGLITSESLRTNSALLGMEGMSKEDAEAMVRQGDLDGDGKLNETEFCILMVRLSPGMMEDAEAWLEKAIDEELRKSST 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2981 114 Pfam EF-hand domain pair 38 88 IPR002048 GO:0005509
Ssu4g2981 114 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Ssu4g2981 114 PANTHER CALCIUM-BINDING PROTEIN KIC 2 111 - -
Ssu4g2981 114 SUPERFAMILY EF-hand 10 110 IPR011992 -
Ssu4g2981 114 Gene3D - 2 114 - -
Ssu4g2981 114 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Ssu4g2981 114 PANTHER CALCIUM-BINDING PROTEIN KIC 2 111 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2981 Ssu-Chr4 76155499 76155843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2981 1 109 EF-hand Containing Proteins AT2G46600 76.147 4.23e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2981 K24345 - gmx:100802677 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2981 4 76155499 76155843 Ssu4g2981 4 76155499 76155843 ECH
Ssu4g0103 4 1699266 1699643 Ssu4g2981 4 76155499 76155843 PCT