Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0103 ATGGAAAGCAACCAATCCGCGAAAGAGAGCACGGTGGAAACAGAGTTCGAGGACTTGCTGCCTGCGATGGCAGAGAAGCTGGACGTGGAGACCTTTGTGTCTGAATTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAATGGGTTTGATCACTGGTGAGAGTCTGATGAGGAATTCAGCTCTGTTGGGTATGGATGGGATGAGCAAGGAGGATGCAGAGGCCATGGTTAGACAGGGCGATCTTGATGGGGATGGCAAGCTCAGTGAGACTGAGTTTTGCATCCTTATGGTCAGGCTTAGCCCTGGAATGATGGAAGACGCTGAGGCCTGGCTTCACAAGGTACTCCAACAAGAGCTCACCAAATCCTCAACTTAA 378 0.5132 MESNQSAKESTVETEFEDLLPAMAEKLDVETFVSELCGGFKLLADPEMGLITGESLMRNSALLGMDGMSKEDAEAMVRQGDLDGDGKLSETEFCILMVRLSPGMMEDAEAWLHKVLQQELTKSST 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0103 125 PANTHER CALCIUM-BINDING PROTEIN KIC 1 122 - -
Ssu4g0103 125 Gene3D - 13 125 - -
Ssu4g0103 125 Pfam EF-hand domain pair 49 99 IPR002048 GO:0005509
Ssu4g0103 125 SUPERFAMILY EF-hand 15 110 IPR011992 -
Ssu4g0103 125 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Ssu4g0103 125 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Ssu4g0103 125 PANTHER CALCIUM-BINDING PROTEIN KIC 1 122 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0103 Ssu-Chr4 1699266 1699643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0103 5 124 EF-hand Containing Proteins AT2G46600 66.667 3.95e-56 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0103 K24345 - gmx:100787197 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0103 4 1699266 1699643 Ssu4g0103 4 1699266 1699643 ECH
Ssu4g0103 4 1699266 1699643 Ssu4g2981 4 76155499 76155843 PCT