Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2960 ATGATCCCCTGCCGGTCCCCCCTCTGCCGCCGCCTCGACTCGCCGGGATGCAGCCGGAAAAACAGCGTTTGCCAGTATCAAGTTTCCTACGGCGACGGTTCGTTCACGTTCGGGGACTTCTCCACCGAAACGCTGACGTTTCGACGCGCGCAGGTCCCGCGCGTGGCCCTCGGCTGCGGCCACGACAACGAGGGCCTCTTTGTGGGCGCCGCGGGTTTGTTGGGCCTCGGTCGCGGGGGGTTGTCGTTTCCCAGCCAGACCGGAGCCCGGTTCAACAACAAATTCTCTTACTGTTTAACCGACCGAACCGCCTCGGCCAAACCGTCCTCGGTCGTGTTTGGCGACTCCGCCATTTCGCGAACCGCCCGGTTCACTCCGTTGATCAAAAACCCAAAGCTCGACACCTTTTATTACGTTGAGCTGCTTGGGGTCAGCGTTGGCGGCGCGCCGGTTCGCGGCATTTCGGCTTCGCTCTTTCGGCTCGACCCGACCGGGAACGGTGGGGTGATTATCGACTCGGGGACTTCCGTGACGCGCCTCACGCGCCCCGCGTACGTGGCTCTCAGAGACGCGTTTCGGGTCGGGGCTTCGCACTTGAAGCGCGGGCCGGAGTTCTCGCTTTTCGACACGTGTTTTGACCTCTCGGGGCTGTCTGAGGTTAAGGTTCCGACCGTGGTGTTGCACTTCCGCGGTGCTGACGTGTCCTTGCCGGCGACGAATTATCTCATTCCGGTGGATAATAGTGGGAGCTTCTGCTTTGCGTTTGCCGGAACGATGAGCGGGTTGTCTATCATTGGGAACATTCAACAGCAAGGGTTTCGGGTTGTGTTTGACTTGGCGGGTTCTCGGGTCGGGTTTGCCCCCAGAGGGTGCGCGTGA 879 0.6132 MIPCRSPLCRRLDSPGCSRKNSVCQYQVSYGDGSFTFGDFSTETLTFRRAQVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPSQTGARFNNKFSYCLTDRTASAKPSSVVFGDSAISRTARFTPLIKNPKLDTFYYVELLGVSVGGAPVRGISASLFRLDPTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASHLKRGPEFSLFDTCFDLSGLSEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2960 292 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 169 180 IPR001969 GO:0004190|GO:0006508
Ssu4g2960 292 Pfam Xylanase inhibitor N-terminal 2 115 IPR032861 -
Ssu4g2960 292 Gene3D Acid Proteases 1 112 IPR021109 -
Ssu4g2960 292 PANTHER ASPARTYL PROTEASES 2 291 IPR001461 GO:0004190|GO:0006508
Ssu4g2960 292 Gene3D Acid Proteases 113 292 IPR021109 -
Ssu4g2960 292 ProSiteProfiles Peptidase family A1 domain profile. 1 287 IPR033121 -
Ssu4g2960 292 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 2 291 - -
Ssu4g2960 292 SUPERFAMILY Acid proteases 2 291 IPR021109 -
Ssu4g2960 292 Pfam Xylanase inhibitor C-terminal 137 287 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2960 Ssu-Chr4 75662160 75665134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2960 1 291 Miscellaneous Gene Families AT1G44130 26.625 5.37e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2960 K22683 - gmx:100791511 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2960 4 75662160 75665134 Ssu4g2960 4 75662160 75665134 ECH
Ssu4g0123 4 2105707 2110121 Ssu4g2960 4 75662160 75665134 PCT