Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0123 ATGAGGAGAAACACGAAATCAACAGAGGTCTCCTACGGCGACGGCTCCTTCACGTTCGGCGATTTCTCCACCGAAACGCTGACGTTTCGGAGAACCAGAGTCGCGCGCGTGGCGCTCGGGTGCGGCCACGACAACGAGGGCCTTTTTGTCGGCGCTGCCGGGCTTTTGGGCCTGGGCCGCGGGGGGTTATCGTTTCCGGTCCAGACCGGACGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTGGACCGCTCCGCTTCGGCGAAACCGTCTTCCATCGTGTTCGGAGATGCCGCTGTTTCCCGAACCGCGCAGTTCACCCCGCTCTTGAAAAACCCTAAGCTCGACACTTTCTACTACGTGGAGCTCCTCGGGATCAGCGTCGGCGGCGCGCCGGTGCGGGGCCTCTCCGCCTCGCTCTTCCGCCTCGACGCCGCGGGGAACGGCGGCGTCATCGTCGACTCGGGCACGTCCGTCACGCGGCTGACCCGACCCGCGTACATTGCCCTCCGAGACGCTTTCCGCGTCGGGGCCTCGCATCTGAAGCGCGCGCCGGAGTTCTCGCTGTTCGACACGTGTTTCGACCTGTCGGGGCTCACGGAGGTGAAGGTGCCGACGGTGGTGCTACATTTCCGCGGCGCTGACGTGTCGCTCCCGGCGACGAATTACTTGATTCCGGTGGATAATAGTGGTAGCTTCTGCTTCGCTTTTGCGGGAACCATGAGTGGTTTGTCCATAGTCGGGAACATCCAGCAGCAAGGGTTCCGGGTCGTGTATGACTTGGCGGGTTCACGGGTCGGGTTTGCCCCGAGAGGTTGCTCTTGA 825 0.6267 MRRNTKSTEVSYGDGSFTFGDFSTETLTFRRTRVARVALGCGHDNEGLFVGAAGLLGLGRGGLSFPVQTGRRFNQKFSYCLVDRSASAKPSSIVFGDAAVSRTAQFTPLLKNPKLDTFYYVELLGISVGGAPVRGLSASLFRLDAAGNGGVIVDSGTSVTRLTRPAYIALRDAFRVGASHLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIVGNIQQQGFRVVYDLAGSRVGFAPRGCS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0123 274 PANTHER ASPARTYL PROTEASES 7 273 IPR001461 GO:0004190|GO:0006508
Ssu4g0123 274 Gene3D Acid Proteases 2 93 IPR021109 -
Ssu4g0123 274 Gene3D Acid Proteases 94 274 IPR021109 -
Ssu4g0123 274 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 273 - -
Ssu4g0123 274 SUPERFAMILY Acid proteases 4 273 IPR021109 -
Ssu4g0123 274 ProSiteProfiles Peptidase family A1 domain profile. 1 269 IPR033121 -
Ssu4g0123 274 Pfam Xylanase inhibitor N-terminal 3 97 IPR032861 -
Ssu4g0123 274 Pfam Xylanase inhibitor C-terminal 119 269 IPR032799 -
Ssu4g0123 274 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 151 162 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0123 Ssu-Chr4 2105707 2110121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0123 9 273 Miscellaneous Gene Families AT1G77480 26.871 1.57e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0123 K22683 - gmx:100794269 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0123 4 2105707 2110121 Ssu4g0123 4 2105707 2110121 ECH
Ssu4g0123 4 2105707 2110121 Ssu4g2960 4 75662160 75665134 PCT