Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2928 ATGGCCTATTCTGCAGTTCCCACCTCTTTAACTTTCTCTGCAGCAATGGAAATCACAAAAGAGAATAGAGTTCTTCTCCACCCACTCTCCAACAAAGGCTTACGCAACCATTCAGCAATCATGAGGTCTTACTCTAGCAATCTTGTGTGTTACTCCTTTAACCGCATCCAAGCCACATCAATGCAACCAAAGCATAAAAACAGCCACTCCATAATAGTTTTACCACTTCAACTTTCAGTTTCCATTCTTCCAAATCCACTTCGCTCCTTCTTACTTGACCCAGAAACGAGCAGGGACATGAACATGGGGCAGAAGGGTATCAATGTTAAGGAAAACATGGTGGAAAGCAGTGCAGAAGAGATGATAAATAGAACCAGCTGGGTACAGAGATTAATGGAAATTAAGACATACTGGAGAGGCAACCTACCTAAAGAGAGCATGGATCCAGATATAATATGCAAACACAACACCAATAATGAGTGTGATTGTGATGAAGATGACAATGTTTGTGTGGCAGGTTatgaggaaagagaagaagaagaggaagatggACAAGAAGTGACATGTGATCGTGACTCATTCTCAAAATTTCTGGTTCCAGTTCCGTGGTCTGATACCGAACTATACTCTAAGCTGGCTTTACTGTGCAACATGGCTTATGTCATACCACAGATCAAGGCTAAGGACTTGGGGAGATACTATGGTCTTCAATTTGTAACATCGTCTTTGGAAAAGAAAGGCGATGTGACTAAGATAAAAGCAAAACTTGATCAGGACTCCATTTGTGTGCCTGTGGATGCCTCAGTAGCCTCTCAAGATGGCTCAGAGAAAGGTGATGATAATGAACAGAAGCATCAAATCAAGCTTGCTTATGATATTACTGCCTCAGCTGCCTCTTATGTCAAATCACGTGCTAAGGACCTTGCGTCTCTTGCTTCTAAGTCACAGCAGCATAGTGGCAACGAGGATTTCAATGGAAGAGAAGACTCGCCACTTGAGGAGGCTGATGAAACTCCACAGGTTTACAAGTCAAATTTTGCAGTTAATGTTGCAGCATTAACAATGACTGTTGTGGCTGCAGCAGGAACTGCAATGGACCTTCAGTTACTTCGTTCCTCATCTTGTGAATGGTTTGTTTGTGATGATCCCAACACACACACTCGATGCTTTGTCATTCAGGGATCTTATTCCGTGGCATCTTGGCAAGCAAACCTCTATTTTGAGCCTACCACATTTGAGGGCACAGATGTACTTGTTCACAGTGGAATATATGAAGCTGCCAAGGGAATATATGAGCAATTCATGCCAGAAATAATGGACCATTTGAAGAAACATGGGGATAGAGCAAAGCTTCAATTCACTGGCCACTCCCTTGGGGGTAGTCTCTCTCTTTTGGTCTATTTGATGCTACTAACAAGGAAGGTTGTCAGCCCCTCAACTCTTCGGCCAGTAGTGGCTTTTGGTTCGCCATTTGTGTTATGTGGAGGCCAAAAATTACTCAATGAGCTAGGCCTGGATGAGAGCTACATTCACTGTATTATGATGCATAGAGATATTGTTCCCAGGGTCTTCTCATGCAGTTTCCCTAACCATGTTATAACTGTCCTGAAGCGCTTATATGGCTCATTTGGGTCCCATCCTTGTCtgataaaaaatAAACTATTGTACTCACCATTGGGTAAAATATTCATTCTCCAACCAGATGAGAAAACATCTCCTCCACATCCTTTACTCCCATCAGGAAGTGGTTTCTATGCTTTGGACAATAGCAGATGTGGATACTCTCCCATTGTCCTCAGATCCTTCCTGAATCAACCACACCCCCTTGAAACACTAAGCAGTCCAATAGCATATGGCTCAGATGGCACAGTTTTAAGAGACCATGACTGTAACAACTATCTTAAAGCAGTCAATGGAGTTTTAGGACAACATTCAAAGATTGTTGTCAGGACAAGGAGATCCAAGCAGCCacgaaaaatatttaagaaaaagatgagaaaataa 2004 0.4132 MAYSAVPTSLTFSAAMEITKENRVLLHPLSNKGLRNHSAIMRSYSSNLVCYSFNRIQATSMQPKHKNSHSIIVLPLQLSVSILPNPLRSFLLDPETSRDMNMGQKGINVKENMVESSAEEMINRTSWVQRLMEIKTYWRGNLPKESMDPDIICKHNTNNECDCDEDDNVCVAGYEEREEEEEDGQEVTCDRDSFSKFLVPVPWSDTELYSKLALLCNMAYVIPQIKAKDLGRYYGLQFVTSSLEKKGDVTKIKAKLDQDSICVPVDASVASQDGSEKGDDNEQKHQIKLAYDITASAASYVKSRAKDLASLASKSQQHSGNEDFNGREDSPLEEADETPQVYKSNFAVNVAALTMTVVAAAGTAMDLQLLRSSSCEWFVCDDPNTHTRCFVIQGSYSVASWQANLYFEPTTFEGTDVLVHSGIYEAAKGIYEQFMPEIMDHLKKHGDRAKLQFTGHSLGGSLSLLVYLMLLTRKVVSPSTLRPVVAFGSPFVLCGGQKLLNELGLDESYIHCIMMHRDIVPRVFSCSFPNHVITVLKRLYGSFGSHPCLIKNKLLYSPLGKIFILQPDEKTSPPHPLLPSGSGFYALDNSRCGYSPIVLRSFLNQPHPLETLSSPIAYGSDGTVLRDHDCNNYLKAVNGVLGQHSKIVVRTRRSKQPRKIFKKKMRK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2928 667 MobiDBLite consensus disorder prediction 311 338 - -
Ssu4g2928 667 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 5 659 IPR043367 GO:0008970
Ssu4g2928 667 CDD Lipase_3 343 527 - -
Ssu4g2928 667 MobiDBLite consensus disorder prediction 321 336 - -
Ssu4g2928 667 Pfam Lipase (class 3) 390 526 IPR002921 GO:0006629
Ssu4g2928 667 SUPERFAMILY alpha/beta-Hydrolases 372 548 IPR029058 -
Ssu4g2928 667 PANTHER PHOSPHOLIPASE A1 PLIP1, CHLOROPLASTIC 5 659 - -
Ssu4g2928 667 Gene3D alpha/beta hydrolase 335 550 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2928 Ssu-Chr4 74665483 74668725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2928 1 653 Acyl Lipid Metabolism Gene Families AT3G61680 49.925 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2928 - - gmx:100796262 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2928 4 74665483 74668725 Ssu4g2928 4 74665483 74668725 ECH
Ssu4g0139 4 2327775 2330478 Ssu4g2928 4 74665483 74668725 PCT