Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0139 ATGGCTTACAGTGCAGTTGGCATGCCTACCTCTCCAGCAGCTACCACTGCAACTATGGACATTGCAAAAGAGCATCATGGTCTTCGCCGCTCTCAGTCCAGCAAAGACCTATGCACGCGTTCCATTATGCGGAGGTCTTATTCTGACAACCACCTATGTTGCTCCATCAATCGCATTCAAGCCACAACAGTGCCACCAAAACTTAAGAGTAATCGGTCAATGGGAATTTCCCCGTTTCAATTTTCAGGCTCCATTCTTCCAAATTCACTGCGCTCGTTCTTGTTTGACCCAGAAACAAGCAAGGATATAAGTGTGGGGGAGAAGGAGGAAAATATTGAGGAAAACATGGTGGAAAGCAGCAAAGAAGAGATAGTAAATAGAGCCAACTGGGTAGAGAGGCTTATGGAAATCAAGAAACATTGGAGAAACAGACTGCCGAAAGAAAGCATGGATCCAGATGAGATATGCAACAACAATGCGTATGATGAATGTGAATGTGATGGAGATGACAGTGTTTGTGTGGTGGGTGAAGACAAAGATGAGCAGGAAGTGATATATGATCGCGGCTCATTCTCAGAATTTCTGGTTCAAGTGCCATGGTCTGATACCAAACTATACTCTCAGCTTGCCTTCCTGTGCAACATGGCCTATGTAATACCCCAAATCAAGGCTAAGGACTTGCGAAGATACTACAACCTTCAATTTATAACATCATCTTTAGAGAAGAAAGCCGATGTGGCTAAGTTAAAAGCAGAACTTGATCAGGACTCCACTCGTGTTCCTATAGATGACTCAGTAGCCTCTCAAGATGTCTCAAAGAAAGGCAAAGATAATACACAGAAGCATCAAATCCAAGTAGCTTATGATATTGCTGCTTCAGCAGCCTCTTATGTCCAATTACGAGCTAAGAACCTCTTGTACCTTGCTGCTAAGTCACAACAAAGTGAAAATGAAGATTCTAATGGAAAAGGAGACTCACTGGGAGAAGATTTAGAAGGCACTTCACGGGGTTACAAATCAGAGGTTGCAGCTTATGTTGCAGCATCCACAATGACAGCAGTGGTTGCAGCAGGGGAGAAGGAAAAGCAAGAAGCAGCAAAGGACCTCCAGTCACTTCATTCCTCACCTTGCGAATGGTTTGTTTGTGATGATCCCAGCAATTACACTCGATGCTTTGTGATTCAGGGGTCAGACTCCCTGTCATCTTGGCAAGCAAACCTCTTCTTTGAGCCAACCAAATTCGAgGGCACAGACGTTGTTGTTCACAGAGGAATTTATGAAGCTGCAAAAGGAATATACAAGCAATTCATGCCGGAAATAATGGACCATTTGAAGAGACACGGGGATCGTGCAAAGCTTCAATTCACTGGGCACTCCCTTGGGGGTAGTCTCTCTCTTTTGGTTCATTTGATGCTATTGACTAACAAGGTTGTGAGTCCGTCCACTCTTCGACCAGTAGTGACTTTTGGCTCACCATTTGTATTCTGTGGTGGCCAACAAATAATCAATGAGCTAGGCCTGGATGAGAGCCACATCCACTGTGTGATGATGCATAGAGATATTGTTCCCAGGGCCTTCTCCTGCAATTACCCAAATCATGTAGCTGTAGTCCTTAAGCGCCTAAACAGCTCATTTCGGTCACATCCTTGTCTGCTGAAAAATAAGCTGTTGTACTCACCACTGGGTAAAATATTCATTCTCCAACCCGATGAGAAGACATCTCCTCCGCATCCTTTGCTCCCTTCAGGAAGTGCATTCTATGCCCTGGACAATACTAAATGTGGATACTCTCCAAGTGTTCTTAGAACCTTCCTGAATCAACCACACCCTATTGACACCCTAAGTGATCCAACAGCATATGGTTCAGAAGGCACAATTCTAAGAGACCACGACTCCAGCAACTACCTTAAAGCCATCAATGGAGTCTTGAGGCAACATTCAAAGATTCTCCTTCGCAGAGTGAGGAAGCAACGGATTAATCAGTTGTGGCCACTGTTGACATCACCATCTCCACACTCGTGGAGCCATGAACAGAACTTGGAGAGATGCAGCTTGATGACAAAGGAGATAGTGACAGGGGTTTAA 2085 0.446 MAYSAVGMPTSPAATTATMDIAKEHHGLRRSQSSKDLCTRSIMRRSYSDNHLCCSINRIQATTVPPKLKSNRSMGISPFQFSGSILPNSLRSFLFDPETSKDISVGEKEENIEENMVESSKEEIVNRANWVERLMEIKKHWRNRLPKESMDPDEICNNNAYDECECDGDDSVCVVGEDKDEQEVIYDRGSFSEFLVQVPWSDTKLYSQLAFLCNMAYVIPQIKAKDLRRYYNLQFITSSLEKKADVAKLKAELDQDSTRVPIDDSVASQDVSKKGKDNTQKHQIQVAYDIAASAASYVQLRAKNLLYLAAKSQQSENEDSNGKGDSLGEDLEGTSRGYKSEVAAYVAASTMTAVVAAGEKEKQEAAKDLQSLHSSPCEWFVCDDPSNYTRCFVIQGSDSLSSWQANLFFEPTKFEGTDVVVHRGIYEAAKGIYKQFMPEIMDHLKRHGDRAKLQFTGHSLGGSLSLLVHLMLLTNKVVSPSTLRPVVTFGSPFVFCGGQQIINELGLDESHIHCVMMHRDIVPRAFSCNYPNHVAVVLKRLNSSFRSHPCLLKNKLLYSPLGKIFILQPDEKTSPPHPLLPSGSAFYALDNTKCGYSPSVLRTFLNQPHPIDTLSDPTAYGSEGTILRDHDSSNYLKAINGVLRQHSKILLRRVRKQRINQLWPLLTSPSPHSWSHEQNLERCSLMTKEIVTGV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0139 694 Gene3D alpha/beta hydrolase 336 555 IPR029058 -
Ssu4g0139 694 CDD Lipase_3 343 531 - -
Ssu4g0139 694 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 1 694 IPR043367 GO:0008970
Ssu4g0139 694 PANTHER PHOSPHOLIPASE A1 PLIP1, CHLOROPLASTIC 1 694 - -
Ssu4g0139 694 SUPERFAMILY alpha/beta-Hydrolases 375 566 IPR029058 -
Ssu4g0139 694 Pfam Lipase (class 3) 392 529 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0139 Ssu-Chr4 2327775 2330478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0139 1 668 Acyl Lipid Metabolism Gene Families AT3G61680 55.572 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0139 - - gmx:100790575 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0139 4 2327775 2330478 Ssu4g0139 4 2327775 2330478 ECH
Ssu4g0139 4 2327775 2330478 Ssu4g2928 4 74665483 74668725 PCT