Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2916 ATGAAGATGTTGGACAAGGTGGAGGAATTTAACATGGAGAGAGTGATAGAGGAATTTGAGAGGGTGACAAAGGACGCTGAGAGCATTCAAAGGGAAACGCTGGAAAGGATTTTGGAAGATAACGCTTCTGCTGAGTACTTGCTGAGTTTGGGACTGAATGGGAGGACTGACCCTGAGAGTTTCAAGGCCTTTGTTCCACTGGTCACTCACAAAGAATTGGAGCCTTATATCAACAGAATACTTGATGGCGATGCTTCTTCTATTCTCACTGGCAAACCCATCACAACCATGTCTTTGAGTTCTGGCACTACTCAGGGAAAGCCAAAATATGTGCCATGGAATGATGAATTGTTTGACACCACATTGCAGATATATCACACCTCTTTTGCCTTTAGGAACAGGGAATTTCCCATAAACAATGGCAAGGCCTTGAACCTTATCTACAGCAGCAAACAGTTCAAAACCAAAGGGGGTGTGTTAGCAGGAACTGCCACAACCAATGTGTTCCGCAACCCGGGGTTCCGGCTTGCAATGAAGGCAATTCAGTCCCCATGTTGCAGCCCAGATGAAGTGATATTTGGTCCTGATTTTCACCAATCATTGTACTGCCACCTCTTGTGTGGGCTAATCTTGAGGGAAGAAGTTCAGTTGGTGTCTTCCACATTTGCACACAGCATTGTGTATGCTTTTAGGACCTTTGAGCAAGTGTGGGAGGAGCTTTGTGTTGACATCAGGGAAGGGGTCCTTAACAGCAAGGTCACAGTTCCATCCATTAGGACAGCCATGTCTAAGCTGCTCAAACCTGACCCTGAACTGGCCAACTTGATCCACCAAAAGTGCATGGGGCTGAGCAACTGGTATGGCCTAATACCAGAGCTTTTCCCCAATGTTAAGTACGTTTATGGGATCATGACTGGGTCAATGGAACCttatttgaaaaagttgagGCATTATGCTGGAGAGCTGCCTTTGTTGACTTCTGACTATGGATCTTCTGAAGGGTGGATAGGAACAAATGTGAAACCAAGAGTGCCACCTGAATTGGCCACTTACACTGTGCTTCCTCAAATTGGCTACTTTGAATTCATCCCTCTATCAGTACTAGAGGGAGCTAAGGGAGATGCTAGTTTCCTATGTATGGATCCTAAGCCTGTGGGCCTCACCGAAGTGAAGGTCGGTGAGGAGTATGAGATTGTCATCACCAATCCAGCAGGCTTGTACCGGTATAGGCTCGGCGATGTGGTCAAGGTCATGGGGTTCCACAACTCGGCTCCAGAAGTCAAGTTTGTTCGCCGTAGCAACCTTCTACTCACCATCAACATTGACAAGAACACAGAGAAGGATTTGCAGTTAGCTGTGGAAGCAGCATCACAACTGTTGGCAGAGGAGAAATTGGAAGTTGTTGACTACACTAGCCACATAGATTTATCCATAGAGCCAGGACACTATGTTATCTTCTGGGAAATCAGTGGGGAAGCAAGTGAAGAAGTGCTTGGTGAATGCTGCAACTGTTTGGACAAGTCTTTTATTGATGCTGGCTACACTAGTTCTCGCAAAGTCAACTGCATTGGGGCCCTTGAACTCCGAGTTGTTAGGAGAGGAACGTTTCAGAAGATACTTGAGCATTTCCTAGCGCTAGGAGCTGCTGTGAGTCAGTTCAAGACACCAAGATGTGTAGGCCCTACAAACACCGGGGTGTTGcaaatattgaatgaaaatgttGTGAAGAACTATCTCAGTAGTGCcttcaattga 1755 0.4536 MKMLDKVEEFNMERVIEEFERVTKDAESIQRETLERILEDNASAEYLLSLGLNGRTDPESFKAFVPLVTHKELEPYINRILDGDASSILTGKPITTMSLSSGTTQGKPKYVPWNDELFDTTLQIYHTSFAFRNREFPINNGKALNLIYSSKQFKTKGGVLAGTATTNVFRNPGFRLAMKAIQSPCCSPDEVIFGPDFHQSLYCHLLCGLILREEVQLVSSTFAHSIVYAFRTFEQVWEELCVDIREGVLNSKVTVPSIRTAMSKLLKPDPELANLIHQKCMGLSNWYGLIPELFPNVKYVYGIMTGSMEPYLKKLRHYAGELPLLTSDYGSSEGWIGTNVKPRVPPELATYTVLPQIGYFEFIPLSVLEGAKGDASFLCMDPKPVGLTEVKVGEEYEIVITNPAGLYRYRLGDVVKVMGFHNSAPEVKFVRRSNLLLTINIDKNTEKDLQLAVEAASQLLAEEKLEVVDYTSHIDLSIEPGHYVIFWEISGEASEEVLGECCNCLDKSFIDAGYTSSRKVNCIGALELRVVRRGTFQKILEHFLALGAAVSQFKTPRCVGPTNTGVLQILNENVVKNYLSSAFN 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2916 584 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 3 584 - -
Ssu4g2916 584 Coils Coil 12 32 - -
Ssu4g2916 584 Pfam GH3 auxin-responsive promoter 18 559 IPR004993 -
Ssu4g2916 584 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 3 584 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2916 Ssu-Chr4 74496345 74499276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2916 19 581 EF-hand Containing Proteins AT1G23160 38.927 2.12e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2916 K14506 - gmx:100813492 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2916 4 74496345 74499276 Ssu4g2916 4 74496345 74499276 ECH
Ssu4g0152 4 2565202 2568393 Ssu4g2916 4 74496345 74499276 PCT