Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0152 ATGTTAGAGAGAGTGGAGGAGTTTAACATCGACAAAGTTATAGAAGAGTTTGAGTCATTGACAAGGGATGCGGAAAGGGTTCAGAGGGAAACGCTCAAAAGGATTTTGGAAGATAACGCGTCAGCAGAGTATTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCCGAGAGTTTCAAAGCCTGTGTTCCGCTGGTTACCCACAAAGAATTGGAACCTTATATCTACAGGATTATTGATGGTGTTTCTTGTCCTATTCTCACTGGAAAACCCATCACAACCATGTCTTTAAGTTCTGGTACTACCCAGGGGAAGCCAAAATATGTACCGTGGAACGATGAATTGTTTGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGGAACAGAGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTCAAAACAACAGGGGGTCTAGCTGCTAGAACAGCCACAAGCAATGTGTTCGGTAGTGCTGGTTACAAGTGTGGAATGAGGGCGCTCCTATCCCAATGCTGCAGCCCAGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTATTGTGTGGTCTGATTTTCCGGGAGGAGGTTCAGTTTGTGACTTCTACATTTGCGCATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGTACTGATATCAGAGAAGGGGTTCTCACCAGCAATGTCACCGTTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCGGAATTAGCCAACGTGATCCACAAAAAATGCATGGGATTGAGCAACTGGTACGGGTTGATACCAGAGCTTTTTCCCAATGCTAAGTACATTTATGGCATCATGACTGGGTCAATGGAgccttatttgaaaaaattgaggcACTATGCAGGGGAGCTGCCTTTGTTGACTGCCGACTATGGATCTTCTGAGGGATGGATAGCAGCAAATGTGAACCCAAAACTACCCCCTGAATTTGCCACTTATGCAGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTCAGCGCCTGAGAATTCCAAGGGACAACCTGATTTCCTCTGTATTGATCCTCAGCCTGTGGGCCTGACTGAAGTCAAGGTTGGTGAAGAGTATGAAATTGTTATGACCAATCCAGCAGGTTTATATCGGTATAAGTTGGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTGAAGTTTATTCGGCGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACAGAGAAGGATTTACAGTTAGCTGTGGAAGCTGCAGCCAAGTTGTTAGCAGAGGAGAAATTGGAAGTAGTTGACTTCAGTAGCCATGTGGATTTGTCCATAGAGCCAGGGCACTATGTCATCTTCTGGGAAATCAGTGGGGAAGCAAGTGGTGAACTACTCCGCGAATGCTGCAACTGTTTGGACAAGTCTTTCGTTGATGCCGGCTACACCAGTTCTCGCAAAGTCAACTGCATCGGTGCCCTCGAACTACGCCTTGTGCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACTGCTGTTAATCAGTACAAGACACCAAGATGTGTGGGTCCTTCAAACACCCGAGTGTTGCAAATCTTGAGTGATAATGTTGTGAGCAACTATCTCAGTACCGctttcaattga 1749 0.4414 MLERVEEFNIDKVIEEFESLTRDAERVQRETLKRILEDNASAEYLQSLGLNGRTDPESFKACVPLVTHKELEPYIYRIIDGVSCPILTGKPITTMSLSSGTTQGKPKYVPWNDELFETTMQIYQTSFAFRNREFPIKNGKALSFIYGSKQFKTTGGLAARTATSNVFGSAGYKCGMRALLSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVQFVTSTFAHSIVHAFRTFEQVWEELCTDIREGVLTSNVTVPSIRMAMSKLLKPNPELANVIHKKCMGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYAGELPLLTADYGSSEGWIAANVNPKLPPEFATYAVLPHIGYFEFIPLSAPENSKGQPDFLCIDPQPVGLTEVKVGEEYEIVMTNPAGLYRYKLGDVVKVMGFHNSTPELKFIRRSSLLLNINIDKNTEKDLQLAVEAAAKLLAEEKLEVVDFSSHVDLSIEPGHYVIFWEISGEASGELLRECCNCLDKSFVDAGYTSSRKVNCIGALELRLVRRGTFQKILDHYLGLGTAVNQYKTPRCVGPSNTRVLQILSDNVVSNYLSTAFN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0152 582 Coils Coil 10 30 - -
Ssu4g0152 582 Pfam GH3 auxin-responsive promoter 16 557 IPR004993 -
Ssu4g0152 582 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 582 - -
Ssu4g0152 582 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 582 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0152 Ssu-Chr4 2565202 2568393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0152 17 579 EF-hand Containing Proteins AT1G23160 38.408 3.00e-134 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0152 K14506 - gmx:100794598 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0152 4 2565202 2568393 Ssu4g0152 4 2565202 2568393 ECH
Ssu4g0152 4 2565202 2568393 Ssu4g2916 4 74496345 74499276 PCT