Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0174 ATGGCAGGAGAAACATCTTGGATCAGCCACTATGATGACAGACAAAGGGAGACTGGtgagtttgattcatttttagaACTTGGCGAGGAAGGTGAAAAAGAAGCAACTGCAGTTTCTGTGGATGTAATTTTGCCTGATGACTTGTTGGAACGAATCCTAGCCTATCTCCCCATTGCAAGCATTTTTAGAGCTGGTTGTGTGTCTAAGAGATGGCATGAAATTGTTAATTCAGAGAGGTTTTTATGGAACCTTTCACATGTTCTACAACAAAAACCTTGGTACTTTATGTTTACAAGCTCTGATGAACCAGTTGGTTATGCTTTTGATCCTGTCCTTCGAAAATGGTATGGCATTGAACTTCCATGCATTGGCACTTCTAATTGGTTCATTGCTTCATCATGTGGCATGGTCTGCTTCATGGACAATGACAGCAGAAGTGAATTATGTGTCTGCAACCCAATTACCAAAACCTACAGGAAGCTTGAGGAGCCTCCAGGTTTGAAATTTTCTGATTACAGTGCATTAGCAATCTCAGTGAACAGGGAATCTCACAGTTATGCTGTGGCAATTGTAAAATCTAAACAAGTCCCTGAGAACTTTTTCCAGTGGGATATCTCAATTCATATATACAATTCAGAAAATGCAACCTGGGTGACTTCTTTAACAGAAGTTTTGATGGGGTGGAGAGGTGGTGATGAGAGTGTGATATGCAATGGTACGCTATACTTTTTAGTTTATTCAACTGGGGGTGGCCAACTGGAAAATCGTCATACCCTAATTGCATATAACATGTCCAATCGTTCTTCTCAAGGTAGCTTAACAGGGAACTTTATTCCAGTACCTTGTTCTCTAACATGTGGCCGTCTGATGAATCTGAAGGAAAAGCTTGTAATGGTGGGGGGAATTGGTAAACCGGATCGACCTGACATAATAAAAGGAATTGGTATCTGGCTTCTAAATGATAAGAAGTGGGAAGAGATTGCTCGAATGCCCCACAAGTTCTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCAGTGGTGCAGATGATCTAATATATATTCAGAGTTATGGAGCTCCAGCGCTTCTCATATTTGACATGAACCATAAACAATGGAAATGGTCACAGAAGTGCCCGGTGACAAAAAGATTCCCGCTGCAGCTTTTTACTGGCTTTTGCTTTGAGCCCAGACTTGAAATTGCTCCATAG 1215 0.4074 MAGETSWISHYDDRQRETGEFDSFLELGEEGEKEATAVSVDVILPDDLLERILAYLPIASIFRAGCVSKRWHEIVNSERFLWNLSHVLQQKPWYFMFTSSDEPVGYAFDPVLRKWYGIELPCIGTSNWFIASSCGMVCFMDNDSRSELCVCNPITKTYRKLEEPPGLKFSDYSALAISVNRESHSYAVAIVKSKQVPENFFQWDISIHIYNSENATWVTSLTEVLMGWRGGDESVICNGTLYFLVYSTGGGQLENRHTLIAYNMSNRSSQGSLTGNFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLNDKKWEEIARMPHKFFQGFGEFDDVFASSGADDLIYIQSYGAPALLIFDMNHKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0174 404 SUPERFAMILY F-box domain 43 143 IPR036047 GO:0005515
Ssu4g0174 404 PANTHER F-BOX FAMILY PROTEIN 1 404 IPR045048 -
Ssu4g0174 404 SMART fbox_2 44 84 IPR001810 GO:0005515
Ssu4g0174 404 Gene3D - 34 84 - -
Ssu4g0174 404 TIGRFAM F_box_assoc_1: F-box protein interaction domain 134 333 IPR017451 -
Ssu4g0174 404 Gene3D - 88 394 IPR015915 GO:0005515
Ssu4g0174 404 Pfam F-box-like 44 83 IPR001810 GO:0005515
Ssu4g0174 404 ProSiteProfiles F-box domain profile. 44 84 IPR001810 GO:0005515
Ssu4g0174 404 SUPERFAMILY Galactose oxidase, central domain 95 382 IPR011043 -
Ssu4g0174 404 PANTHER BNAA09G39300D PROTEIN 1 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0174 Ssu-Chr4 2852619 2853833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0174 - - gmx:100817678 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0174 4 2852619 2853833 Ssu4g2883 4 73632792 73634009 PCT