Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2871 ATGGCTCTTCTAATCCGCTCCCCAGAAATGTCCGTTGCTCCCCAAATTGTCCCAAACCCTAACCCTAAGCTGAGCAAACTCCACAGCTTCAAACCCTACACAAAGGGCAAAGCTATTGGGTCATCGCGCGGGGTGAGAATTTCTTGCAGAGTGAAAGATTGTGCGGTTTTGGATTTGGATTTGGATGAGAACGTGAAGTCGTACGGTCAATTTTCGGTTCCGGTGAAGCGAGGGTCGAAGCAGAgcaaagaggaggaagaagagaagcAGAATTACTATGTTAATGTGGGATATGCTATCCGAACTTTGAGAGAGGAATTCCCTGATCTCTTCTACAGGGAACTTAGCTTTGACATCTACAGGGATGATATTGTGTTTAAGGATCCTATGAACACGTTCATTGGTATTGAGAATTACAAATCTATCTTCTGGGCACTACGATTTCACGGTAGAATGTTTTTCAAAGCGTTGTGGTTGGACTTAAGTAGTGTATGGCAGCCTGTTGAGAATGTCATTATGGTTCGCTGGACTGTTCATGGTATCCCACGAGTTCCATGGGAAAGTCGTGGCAGGTTTGATGGAACCTCTGAGTATAAACTTGACAAGGAAGGCAAGATTTTTGAGCACCGGGTTGACAATATTGCTCTGAATTCACCTCCTCGGTTCAAAGTGCTGGGTGTGGAAGAATTAATTCAATCTATTGGCTGCCCCTCGACCGCAAGACCGACGTATTTTGAAGTATCTTCGCGTCCTAAGAGAACGTAA 765 0.4353 MALLIRSPEMSVAPQIVPNPNPKLSKLHSFKPYTKGKAIGSSRGVRISCRVKDCAVLDLDLDENVKSYGQFSVPVKRGSKQSKEEEEEKQNYYVNVGYAIRTLREEFPDLFYRELSFDIYRDDIVFKDPMNTFIGIENYKSIFWALRFHGRMFFKALWLDLSSVWQPVENVIMVRWTVHGIPRVPWESRGRFDGTSEYKLDKEGKIFEHRVDNIALNSPPRFKVLGVEELIQSIGCPSTARPTYFEVSSRPKRT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2871 254 PANTHER - 38 252 - -
Ssu4g2871 254 PANTHER RIKEN CDNA 2310061I04 GENE 38 252 IPR018790 -
Ssu4g2871 254 SUPERFAMILY NTF2-like 115 211 IPR032710 -
Ssu4g2871 254 Pfam Uncharacterized conserved protein (DUF2358) 99 209 IPR018790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2871 Ssu-Chr4 73445283 73447843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2871 - - gmx:100792423 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2871 4 73445283 73447843 Ssu4g2871 4 73445283 73447843 ECH
Ssu4g0179 4 2919161 2920257 Ssu4g2871 4 73445283 73447843 PCT