Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0179 ATGACCATGGCCCTTCTCATCCATTCCCCGGAAACGTCCTTTGTCTCCAAAATTGCGCACAACCATAACCCTAAACCCAGCAAACTCCACAACTTTAAACCCCTCACAAGGGGCAAGACAATTGGGTTAAAAGTGAGTTGCAAAGTTAAGGATTGTGGGGTTTTGGGTTTGGATCAGAATTTAAGTTCGTACGGTCAGTTTTCAGCTCCAGTGAAGCGAGGgagcaaagaagaagaagaaaagcaaaaataCTACGTGAATTTGGGGTATGCTATTCGGTCACTGAGGGAAGACTTCCCTGCCCTCTTCTACAGAGAACTCTCCTTCGACATCTACAGGGATGATATCGTATTTAAAGATCCTTTGAATACGTTCGTTGGCATTGAGAGTTACAAGTCAATCTTCTGGGCTCTACGATTTCATGGTAGGATATTTTTCAAGGCTTTGTGGATTGACTTAACCAGCGTGTGGCAGCCTGTTGAGAACATCATCATGGTTCGCTGGACTGTTCATGGAATTCCACGAGTTCCATGGGAGAGTCGTGGTCGTAGGTTTGATGGAACCTCTGAGTATAAACTTGACAAGAATGGCAAGATTTTTGAACACCGGGTTGACAACGTTGCTCTGAATACACATCCTAAATTTAAAGTGCTCCGTGTCGAAGAGTTGATTCCGTATATTGGCTGCCCCTCCACTCCAAGACcaacttattttgaaacatcATCATCTACGAAGAGAACTTGA 744 0.4207 MTMALLIHSPETSFVSKIAHNHNPKPSKLHNFKPLTRGKTIGLKVSCKVKDCGVLGLDQNLSSYGQFSAPVKRGSKEEEEKQKYYVNLGYAIRSLREDFPALFYRELSFDIYRDDIVFKDPLNTFVGIESYKSIFWALRFHGRIFFKALWIDLTSVWQPVENIIMVRWTVHGIPRVPWESRGRRFDGTSEYKLDKNGKIFEHRVDNVALNTHPKFKVLRVEELIPYIGCPSTPRPTYFETSSSTKRT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0179 247 PANTHER - 22 246 - -
Ssu4g0179 247 SUPERFAMILY NTF2-like 109 204 IPR032710 -
Ssu4g0179 247 Pfam Uncharacterized conserved protein (DUF2358) 91 202 IPR018790 -
Ssu4g0179 247 Gene3D - 107 206 - -
Ssu4g0179 247 PANTHER RIKEN CDNA 2310061I04 GENE 22 246 IPR018790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0179 Ssu-Chr4 2919161 2920257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0179 - - gmx:100792423 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0179 4 2919161 2920257 Ssu4g0179 4 2919161 2920257 ECH
Ssu4g0179 4 2919161 2920257 Ssu4g2871 4 73445283 73447843 PCT