Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2844 ATGGGTTTGGGGAGTAAGAGCCAACAGCTTCTGTCCAAGATTGCAACCAATGACAAACATGGGGAAAACTCTCCATATTTTGATGGGTGGAAGGCATACGATAAAAACCCATTTCACCCTAAGAAAAATCCTCAGGGCGTAATCCAGATGGGTCTCGCCGAAAATCAACTATGCTTTGATCTGGTTGAAGAGTGGATTAGGAATAATCCCGAGGCTTCGATTTGCACTTCTGAAGGAATGCATCAGTTCAGAAATATCGCTAACTTTCAGGACTATCATGGGTTGCAACAGTTCAGAAATgcTATGGCAAATTTTATGTCAAAAGTGAGAGGAGGTAGGGTCAGATTTGATCCAGACCGTATATTGATGAGTGGAGGGGCTACGGGGGCAAACGAACTAATCATGTTCTGCTTGGCTGATCCTGGAGATGCTTTTATGATTCCTACCCCATTTTATCCTGGATTTGTCCGTGACTTGTGTTGGCGAACCGGGGTGCAATTAATTCCTGTCCACTGTGATAGCTCCAACAACTTCAAGATAACAAGAGAAGCTCTTGAATCAGCATACAAGAAAGCCAGAGAGGACAACATCAACGTGAAGGGTTTGATCATAACAAACCCTTCTAACCCTTTGGGCACCACCTTAGACAAGGACACGTTGAAGAGCCTAGTGAGCTTCATCAACGAGAAAAACATCCACTTGGTTTGCGATGAAATCTACGCAGCCACTGTGTTCAGTTCTCCCAAGTATGTAAGCGTGGCTGAAGTGATCCAAGAAGTGGAACATTGCAAACGTGACCTAATTCACCTAATTTATAGCTTGTCTAAGGACATGGGGTTCCCCGGTTTCAGAGTTGGGATAGTTTATTCATTCAACGACGAAGTGGTGAATTGTGGAAGGAAAATGTCAAGCTTCGGATTAGTCTCCTCGCAAACTCAACACATGTTGGCTTCGATGCTTTCGGATGAAAAATTTGTATCAAGGTTTATTTCGGAGAACTCAAGGAGGCTGGCAAAGAGGCATGACAAGTTCGTGAAGGGACTTGAAGAGGTTAACATTACTCGATTTCCAAGCAATGCGGGACTTTTTTGCTGGATGAACTTGAAGGGTTTGTTGAAGGAACCAACGTTTGAGGCTGAGTTGAAGCTGTGGCGTGTGATTATCCATGAGGTGAAGCTCAACGTGTCACCGGGCTCTTCTTTCAACTGTTCTGAGCCGGGTTGGTTTAGGGTTTGCTTTGCCAACATGGACGATGAAACTGTGGATGTTGCACTCAACAGAATTCGTGCATTTGTAGGGAAAGAAACAAAGAAGCCGGTGGGAATCAAACGTTGGCAACCGAATCTTAGGCTcagtttttcttcaatgaggTTTGATGAGAGTGTTATTATGTCTCCTCATTCACCTATCCCCACGTCACCGCTTGTTCGAGCCACTTGA 1440 0.4396 MGLGSKSQQLLSKIATNDKHGENSPYFDGWKAYDKNPFHPKKNPQGVIQMGLAENQLCFDLVEEWIRNNPEASICTSEGMHQFRNIANFQDYHGLQQFRNAMANFMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFMIPTPFYPGFVRDLCWRTGVQLIPVHCDSSNNFKITREALESAYKKAREDNINVKGLIITNPSNPLGTTLDKDTLKSLVSFINEKNIHLVCDEIYAATVFSSPKYVSVAEVIQEVEHCKRDLIHLIYSLSKDMGFPGFRVGIVYSFNDEVVNCGRKMSSFGLVSSQTQHMLASMLSDEKFVSRFISENSRRLAKRHDKFVKGLEEVNITRFPSNAGLFCWMNLKGLLKEPTFEAELKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVDVALNRIRAFVGKETKKPVGIKRWQPNLRLSFSSMRFDESVIMSPHSPIPTSPLVRAT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2844 479 Gene3D - 70 322 IPR015421 GO:0003824
Ssu4g2844 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ssu4g2844 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 449 - -
Ssu4g2844 479 Pfam Aminotransferase class I and II 48 428 IPR004839 GO:0009058|GO:0030170
Ssu4g2844 479 SUPERFAMILY PLP-dependent transferases 16 433 IPR015424 -
Ssu4g2844 479 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 449 - -
Ssu4g2844 479 Gene3D Aspartate Aminotransferase, domain 1 36 427 IPR015422 GO:0003824
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Ssu4g2844 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Ssu4g2844 479 CDD AAT_like 48 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2844 Ssu-Chr4 72739205 72742871 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2844 K20772 - gmx:100817401 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2844 4 72739205 72742871 Ssu4g2844 4 72739205 72742871 ECH
Ssu3g0677 3 16267531 16271130 Ssu4g2844 4 72739205 72742871 PCT