Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0677 aTGGGTTTGGGGAATGAGAGTCACCAGCTTCTGTCTAAGATTGCAACCAACGATAAGCATGGAGAGAATTCTCCTTACTTTGATGGTTGGAAGGCATATGATTCAAACGCATTTCACGCAACAAAAAATCCTCAGGGTGTTATCCAGATGGGTCTTGCAGAAAATCAGCTCTGCTTTGATCTAATTGAAGAGTGGATAGGGAATAATCCCAATGCCTCCATTTGCACTGCGGAAGGAGTGAATCAGTTCAAATATATTGCGAACTTTCAGGACTATCATGGATTGCTGGAGTTCAGAAAAGCTGTGGCAAATTTTATGTCAAAAGTGAGAGGTGGTAGGGTAAGTTTTGATCCAGACCGTATATTGATGAGTGGAGGGGCCACAGGGGCGAACGAGCTAATCATGTTCTGTTTGGCTGATCCCGGAGATGCTTTTCTGGTTCCTAGCCCTTATTATCCAGCATTTGTCCGAGACTTGTGTTGGAGAACTAGGGCGCAACTAATTCCCGTAGAGTGTCACAGCACCAACAACTTCAAGATAACAAGGGAGGCTCTTGAAGCAGCATATAAGAAAGCAAAAGATGATAACATCAATGTGAAGGGGGAAACACTGAAGAGCATTGTGGACTTCATCAATGAAAAGAACATCCACTTAGTGTGTGATGAAATCTATGCTGCCACAGTGTTCAGAGCCCCTTGCTTTGTGAGTGTCTCTGAAGTCATGCAAGACATGGAGCACTGCAAACGTGACCTCATTCACATTATTTATAGTTTGTCTAAGGACTTGGGGCTTCCAGGGTTCAGAGTTGGCATAGTTTATTCATACAATGATGAAGTGGTGAACTGTGGAAGGAAAATGTCAAGCTTCGGATTAGTCTCATCTCAGACACAGCATTTTCTGGCTGCAATGCTCTCTGATGACAAGTTTGTGGAGAGGTTTCTGGCGGAGAGTTCTAGAAGGTTGGCTGCAAGGCACAACCACTTCACGAAGGGACTTGAGAAGGTTAACATCACTTGCTTGCCAAGCAATGCAGGGCTTTTCTGTTGGATGAATTTGAGGAGTTTGCTCAAGGAACAAACATTTGAAGGGGAAATGATGCTGTGGCGTGTGATCATCAATGAGGTGAAGCTTAACGTGTCACCAGGGTCAGCTTTTGATTGTTCTGAGCCTGGTTGGTATAGGGTTTGCTTTGCCAACATGGATAATGAAACTGTGGATGTTGCACTCAAAAGGATCAGGGCATTTGTTGGCAAAGAGACAGAGAAACCAGTGGAACCCAAACGTTGGAAAAGTAACCTTAGACTCAGCTTCTCCGCGAGAAGATTTGATGAGAATGTTATGTCACCTCACATGATGTCACCCCATTCACCAATGCCTCACTCACCCCTTGTCAAAGCCACTTAA 1404 0.4437 MGLGNESHQLLSKIATNDKHGENSPYFDGWKAYDSNAFHATKNPQGVIQMGLAENQLCFDLIEEWIGNNPNASICTAEGVNQFKYIANFQDYHGLLEFRKAVANFMSKVRGGRVSFDPDRILMSGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTRAQLIPVECHSTNNFKITREALEAAYKKAKDDNINVKGETLKSIVDFINEKNIHLVCDEIYAATVFRAPCFVSVSEVMQDMEHCKRDLIHIIYSLSKDLGLPGFRVGIVYSYNDEVVNCGRKMSSFGLVSSQTQHFLAAMLSDDKFVERFLAESSRRLAARHNHFTKGLEKVNITCLPSNAGLFCWMNLRSLLKEQTFEGEMMLWRVIINEVKLNVSPGSAFDCSEPGWYRVCFANMDNETVDVALKRIRAFVGKETEKPVEPKRWKSNLRLSFSARRFDENVMSPHMMSPHSPMPHSPLVKAT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0677 467 Pfam Aminotransferase class I and II 48 412 IPR004839 GO:0009058|GO:0030170
Ssu3g0677 467 Gene3D Aspartate Aminotransferase, domain 1 36 411 IPR015422 GO:0003824
Ssu3g0677 467 Coils Coil 182 202 - -
Ssu3g0677 467 CDD AAT_like 65 414 - -
Ssu3g0677 467 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 433 - -
Ssu3g0677 467 SUPERFAMILY PLP-dependent transferases 16 417 IPR015424 -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 251 275 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 283 306 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Ssu3g0677 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 216 239 - -
Ssu3g0677 467 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 433 - -
Ssu3g0677 467 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 257 270 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ssu3g0677 467 MobiDBLite consensus disorder prediction 448 467 - -
Ssu3g0677 467 Gene3D - 70 306 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0677 Ssu-Chr3 16267531 16271130 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0677 K20772 - gmx:100500423 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0677 3 16267531 16271130 Ssu3g0677 3 16267531 16271130 ECH
Ssu3g0677 3 16267531 16271130 Ssu4g2844 4 72739205 72742871 PCT