Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2825 ATGTCCACCATGAAGCCCAATTTCAAAGACCCAGACCATCTCTACGCTTCATGGAGCTTCTCAAAGCTAATggccttcttcttcctcttaatCTCCATCTCCTACCTCTTCTACTCCCTTAGATTCGTGAGCCACTCCTACGATTGCGATCAGAATCAAACCCTCCACATTCCCGTCACTCATCACGTATCCAACACCCCATCTGAAGAAGAGTCCCCACCCTTTGAAGAAACCAGCATTTCCCACGTAGTCTTTGGCATAGGGGCCTCGGCCAAACTTTGGAAGCAGAGAAAAGAGTACATCAAGCTATGGTGGAGGCCTAATGAGATGCGTGGCGTTGTGTGGTTGGAGCAGAAGGTGAAAACCGAACCCGGCGACGAGAGTTCCTTGCCCCCATTGAGGATCTCCAAGGACACTTCGAGGTTCAAGTACAAGAACCCAAAGGGGCACAGGTCGGCCATTAGGATCTCACGCATAGTGTCGGAGACACTCAGGCTTGGGATGAAGGGCGTGAGGTGGTTTGTGATGGGGGATGATGACACGGTTTTTGTCACCGAAAATCTGGTCAGAGTTTTGCAAAAATATGATCACAATCAGTTTTATTACATTGGGAGCTCCTCGGAGAGTCACTtgcaaaacatttatttttcttataatatggCCTATGGGGGTGGTGGGTTTGCCATTAGTTACCCCTTGGCTGTGGCGTTGGAGAAAATGCAAGATGGGTGCATCCAGAGGTACCCCGGGTTGTACGGCTCTGATGATAGGATTCAGGCTTGTATGGCCGAATTAGGGGTTCCACTCACCAAGGAGAAAGGGTTCCATCAGTTTGATGTGTACGGCAATCTCTTTGGGCTCCTCGCGGCCCATCCAGTTGCGCCACTGGTATCCCTCCATCACTTGGACGTGGTAGAGCCCATATTTCCAAACGTGAGCCGGGTCCAGGCCCTGAAGCGGCTTAATGGGCCCATGAAGCTGGACCCGGCTGGGCTCATGCAACAATCCATTTGCTACGACAAAACCCGGATCTGGACCATATCCGTTTCGTGGGGCTACGCGGTTCAAATATTCCGGGGCATTTTCTCTGCCCGGGAAATGGAGATGCCGGCAAGGACCTTCCTGAACTGGTACAAGCGAGCCGATTACACCGCGTATCCGTTCAACACGCGCCCCGTCAGCCGGCATGTTTGTCAGAAACCGTTTGTTTATTACTTGTCTGATGCAATGTATGATAAGGGTGCTAATGAAACTGCAAGTCAATATATTCGGGTTCAGCCAAACCCGGATTGCAAGTGGAAAATGGAGGATCCGACCCAGATCAAAGTGGTGGAGGTTTACAAGAAACCCGACCCACATTTGTGGGACAAGGCTCCAAGAAGAAATTGCTGCAGGATTCAACCTACAAAGAAGAAAGGAACTCTGGTGATTGATGTGGGGGAATGCAGGGAAGACGAAGTTGTTGAATTGTAG 1473 0.4908 MSTMKPNFKDPDHLYASWSFSKLMAFFFLLISISYLFYSLRFVSHSYDCDQNQTLHIPVTHHVSNTPSEEESPPFEETSISHVVFGIGASAKLWKQRKEYIKLWWRPNEMRGVVWLEQKVKTEPGDESSLPPLRISKDTSRFKYKNPKGHRSAIRISRIVSETLRLGMKGVRWFVMGDDDTVFVTENLVRVLQKYDHNQFYYIGSSSESHLQNIYFSYNMAYGGGGFAISYPLAVALEKMQDGCIQRYPGLYGSDDRIQACMAELGVPLTKEKGFHQFDVYGNLFGLLAAHPVAPLVSLHHLDVVEPIFPNVSRVQALKRLNGPMKLDPAGLMQQSICYDKTRIWTISVSWGYAVQIFRGIFSAREMEMPARTFLNWYKRADYTAYPFNTRPVSRHVCQKPFVYYLSDAMYDKGANETASQYIRVQPNPDCKWKMEDPTQIKVVEVYKKPDPHLWDKAPRRNCCRIQPTKKKGTLVIDVGECREDEVVEL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2825 490 Gene3D - 70 320 - -
Ssu4g2825 490 PANTHER FRINGE-RELATED 1 489 - -
Ssu4g2825 490 Pfam Protein of unknown function, DUF604 212 464 IPR006740 -
Ssu4g2825 490 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2825 Ssu-Chr4 72090083 72095691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2825 21 484 Glycosyltransferase AT5G41460 66.667 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2825 - - gmx:100789583 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0691 3 16784326 16789399 Ssu4g2825 4 72090083 72095691 PCT