Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2799 ATGTCAGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTcaagaaataatacaaaaaggCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCCCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTACCAGGCCGCTCAAACAAGgAACGGAAGTCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAGCCGTTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACACCAGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTGGAGCCCTTGAGAAATATAACTGCTGACCCAAGGATCAGGCTTTTGAACCGTTTGTAtgccaaaaagagaaaagaactAAAAGAGCGCGAAAGGTTAAAGAATGTCGAAGTTGAGGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTGTTTTATTAATGGAAACGATGGAGATCCGAGGGGAGTTAAAActtcaaagaataaaaagaagaacCGGAGGAAAAAAGAGCAACAGAAGAACTCTTCTTTAAAGGAGGCATCTGAACTGAACAAGACGgAGGTAAATGGTCATGATATCGGACATCAAAGTTCCGAAGCTGATGGAATTAGTGAGACCTCATATTTACACTATGCAGAAGATGACGCTTTTACTTCTAAGGTTGAGTTTGATGATGGTGATATAGATGATGAGATCGATCCTGctttgaaggaaaaaattgaCAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTGTCTTCAGGGCAAGAAAGGAAGACAGTGCTTTTTACTACAGATGGGAGTGGTTTTCTAAGGCGACATGCTTGTATGTCTTTTTTCCTAGTGTTAAAAGTATTTTCCCTTGTCCATCATATGCTTTCTAGCTGA 1110 0.3757 MSEIDMAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDERSVDDLLCFINGNDGDPRGVKTSKNKKKNRRKKEQQKNSSLKEASELNKTEVNGHDIGHQSSEADGISETSYLHYAEDDAFTSKVEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTVLFTTDGSGFLRRHACMSFFLVLKVFSLVHHMLSS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2799 369 PANTHER SKP1 1 281 IPR016897 GO:0006511
Ssu4g2799 369 Coils Coil 223 249 - -
Ssu4g2799 369 Coils Coil 170 190 - -
Ssu4g2799 369 MobiDBLite consensus disorder prediction 213 262 - -
Ssu4g2799 369 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Ssu4g2799 369 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Ssu4g2799 369 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Ssu4g2799 369 SUPERFAMILY POZ domain 16 80 IPR011333 -
Ssu4g2799 369 PANTHER SKP1-LIKE PROTEIN 20 1 281 - -
Ssu4g2799 369 SMART skp1_3 15 116 IPR001232 GO:0006511
Ssu4g2799 369 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2799 Ssu-Chr4 71377437 71381774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2799 - - gmx:100794666 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2799 4 71377437 71381774 Ssu4g2799 4 71377437 71381774 ECH
Ssu4g2799 4 71377437 71381774 Ssu3g0715 3 17252349 17258524 ECH
Ssu3g0715 3 17252349 17258524 Ssu4g2799 4 71377437 71381774 PCT