Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0715 ATGGCGGTTATTAAACCTGAGatgatgAGGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAACAAGTGGAACAAGAAATTGCAATGTATTGCCCTCTGATTTGTCAAGAAATAATACAAAAGGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCAACTTTAAGCTTAGTTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAAATTTGTTAGGATGGACACAAAGCGGCTCTGTGAATTGACATCTGCTGCAGACGGCCTTCAGTTGAAGCCATTGGTTGATCTTACGAGTCGTGCACTTGCTCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAGATATTTCATCTGCCTGACGATCTTACTGAGGTGTCTGGTGCTTGTGAGAACTCTGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATCGATTGTATgccaaaaaaaggaaagaactaAAAGAGCGTGAGAGGTTAAAGAATATTGAAGTCGAAGAAGAGCATGTAGATGAACGTTCAGTTGATGACCTTTTGTCTTTCATTAATGGAAATGATGGagATCCAAAGGATATTAAAACttctaagaataaaaagaaaaacagaagaaaaaaagagcaaCAACAGAAGAACTCTCTGAAGGAAGCTTCTGAAGTGAATAAGAAGGAAGTAAATGGTCAAAATATCAGACACCAAAGTGCTGAAGCTGATAGAATTGCGGATACCTCAAATTCACATACAGAAGACGTTTTTGCTCATAAGGAGTTCGATGATGGAGATATAGATGATGGGATTGATCCTGCACTGAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCCGATTGAATTCTGATTGGCCAGAGAGGATGCAAGAACTTTTATCATCAGGACAAGAAAGGAACACAAAGCTTTTTACTCCCAATGGAAATAGTTTTCTACGGCGAAATGCTTGTATGTTTTTTCCCTGTGTTTTGAATGATTTTACTTATCCATTACATGCTTGTTAG 1104 0.3768 MAVIKPEMMRPYIWLETSDGSIQQVEQEIAMYCPLICQEIIQKGMGSSKNCAICLPQRVSPATLSLVLDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADGLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEVSGACENSEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKNIEVEEEHVDERSVDDLLSFINGNDGDPKDIKTSKNKKKNRRKKEQQQKNSLKEASEVNKKEVNGQNIRHQSAEADRIADTSNSHTEDVFAHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERNTKLFTPNGNSFLRRNACMFFPCVLNDFTYPLHAC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0715 367 PANTHER SKP1-LIKE PROTEIN 20 2 283 - -
Ssu3g0715 367 Coils Coil 226 246 - -
Ssu3g0715 367 Pfam Skp1 family, tetramerisation domain 12 75 IPR016073 GO:0006511
Ssu3g0715 367 PANTHER SKP1 2 283 IPR016897 GO:0006511
Ssu3g0715 367 SUPERFAMILY Skp1 dimerisation domain-like 82 145 IPR036296 GO:0006511
Ssu3g0715 367 SMART skp1_3 10 111 IPR001232 GO:0006511
Ssu3g0715 367 MobiDBLite consensus disorder prediction 238 255 - -
Ssu3g0715 367 Coils Coil 173 193 - -
Ssu3g0715 367 Gene3D Potassium Channel Kv1.1; Chain A 7 159 IPR011333 -
Ssu3g0715 367 MobiDBLite consensus disorder prediction 210 275 - -
Ssu3g0715 367 Pfam Skp1 family, dimerisation domain 112 146 IPR016072 GO:0006511
Ssu3g0715 367 SUPERFAMILY POZ domain 11 75 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0715 Ssu-Chr3 17252349 17258524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0715 - - gmx:100809439 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0715 3 17252349 17258524 Ssu3g0715 3 17252349 17258524 ECH
Ssu4g2799 4 71377437 71381774 Ssu3g0715 3 17252349 17258524 ECH
Ssu3g0715 3 17252349 17258524 Ssu4g2799 4 71377437 71381774 PCT