Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2798 ATGGTGTCAGTTGGAGCTATATATAGTGTGGTCTATGTGTTCCTGTTTGTTGCTGTCAATTTGGTTTTGGGTGGGGATATAGTTCACCATGATGATGTTGCCCCCAGAAGGCCTGGTTGTGAGAACAACTTTGTTTTGGTAAAAGTCCCCACTTGGATTGATGGTGTGGAAAACAATGAATATGTTGGTGTTGGTGCGAGATTTGGCCCTACATTGGAATCAAAAGAAAAACGTGCCAATCTTACTAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTACAAAGCCTAAGAATAAgCTCACCAGCGAGATCGTTTTGGTGCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATAAACTACCGTACAGAACTTTTCAAGATGGTttgtgaagaaaatgaaactgaTGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGATTGAACTTGGAAAGGCATCTAAAAAATAACTCCAATGTGTCCATCCAGTTGTACTCTCCACTGCGTCCATTGGTTGATGTTGCGGAAGTGTTTTTGTGGCTTATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCCAGAGAAGCAGCTATTGAGCAAGAGAAGCTTTTAAAGGATGCTTCAGAAGACTATGCTAATACAGAAAATGTTGGTTCCAGTGGTTATGTGGAAATCAGTACTGTAGCAGCAATTTTGTTTGTCGTGATTGCTTCTTGCTTCTTGGTTATGCTGTATAAATTAATGTCATTTTGGTTTGTTGAAGTTCTGGTGGTTCTGTTTTGCATCGGTGGGGTAGAGGGACTGCAAACTTGTTTGGTGGCTTTGTTATCATGTTTCAGTTGGTTTCAACATCCTGCACAAACATTTGTGAAGATACCCTTCTTTGGAGCTGTCTCATATCTGACAGTCGCTGTTACTCCATTCTGCATAGTGTTTGCTGTGGTTTGGGCAGTTTATCGCCGTGCATCTTGTGCTTGGATTGGTCAAGATGTCCTTGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGAACTGTTCTTCTGAGTTGTGCCTTCCTATATGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTTCTCAAGATACCACGCCTGTTTGACCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTAGCATTTTCACTAAGGTATGATTGGCTGGCAAAGAAGAACCTTCGGGGTGGATACTTCTTGTGGGCGATGACTGCTTATGGTTTAGGTCTCCTCATCACATATGTGGCTTTGAACTTGATGGACGGGCATGGTCAGCCAGCTTTGCTTTATATAGTCCCATTTACACTTGGCACCTTTTTGTCATTGGGGAAAAAGAGAGGGGAACTCAAGATTTTATGGACAAGAGGGGAACCAGAAAGGCCTTGCCCTCATATCCAAGAGGATAACCAATCAGTTAACAACCACCATTGA 1629 0.4223 MVSVGAIYSVVYVFLFVAVNLVLGGDIVHHDDVAPRRPGCENNFVLVKVPTWIDGVENNEYVGVGARFGPTLESKEKRANLTRVVMADPPDCCTKPKNKLTSEIVLVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGLNLERHLKNNSNVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWSAREAAIEQEKLLKDASEDYANTENVGSSGYVEISTVAAILFVVIASCFLVMLYKLMSFWFVEVLVVLFCIGGVEGLQTCLVALLSCFSWFQHPAQTFVKIPFFGAVSYLTVAVTPFCIVFAVVWAVYRRASCAWIGQDVLGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLIVAFSLRYDWLAKKNLRGGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKILWTRGEPERPCPHIQEDNQSVNNHH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2798 542 PANTHER SIGNAL PEPTIDE PEPTIDASE 6 542 IPR007369 GO:0004190|GO:0016021
Ssu4g2798 542 SUPERFAMILY PA domain 98 176 IPR046450 -
Ssu4g2798 542 Gene3D - 40 184 - -
Ssu4g2798 542 Pfam Signal peptide peptidase 244 523 IPR007369 GO:0004190|GO:0016021
Ssu4g2798 542 Coils Coil 219 239 - -
Ssu4g2798 542 Pfam PA domain 90 167 IPR003137 -
Ssu4g2798 542 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 6 542 - -
Ssu4g2798 542 SMART psh_8 243 512 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2798 Ssu-Chr4 71366209 71373993 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2798 K09597 - gmx:100795197 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2798 4 71366209 71373993 Ssu4g2798 4 71366209 71373993 ECH
Ssu3g0716 3 17260095 17273289 Ssu4g2798 4 71366209 71373993 PCT