Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0716 ATGGTTTCACTTGGAGCTACATGTGCTGTGTGTTGTGTGTTCATGATGCTTGCCACTTTCACTTTGGCTGGGGACATAGTGCACCCTGATAATATTGCTCCCAAGAGGCCTGGCTGTGACAACAACTTTGTCCTGGTTAAAGTCCCAACTTGGATCGATGGTGTGGAAAGCTGTGAGTATGTTGGTGTTGGTGCAAGATTTGGCCCTACATTGGAATCGAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCGGACCCTCCTAATTGTTGTACCAAGCCTAAGAATAAGCTCACTGGCGAGGTCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCCGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAAGCGAATGAAACTGATATTATTATTGGAATACCTGCTGTCATGCTTCCACAAGATGCGGgtgaaaatttggaaaatcatATACTAAACAAGTCAGTAGTGTCTGTGCAGTTGTATTCCCCACTACGTCCGTTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCAGTTGGTACCATTTTCTGTGCTTCTTATTGGTCTGCCTGGACTGCCAGAGAGGCTGCCATTGAGCAGGAGAGGCTAGTAAAGGATGCTTCAGATGAATATGTAAATATGGAGAATGCTGGTTCTAGTGCTTATGTGGAAATCAGCACTGCCGCAGCAATATCATTTGTTGTGATTGCTTCTTGTTTTTTGGTTATGCTTTACAAATTGATGGCATCTTGGTTTGTTGAAGTTCTGGTGGTTCTATTTTGCATTGGTGGGGTTGAGGGACTACAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAGATGGTTCCAAGATGCTGGACAAACGTTTGTGAAAGTACCCTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATAGTGTTTGCTGTGCTTTGGGGAGTTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATCCTTGGCATCACATTGATAATTACAGTTCTTCAGATTGTCCGGATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGATATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAAAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCCATGCTACTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGGTATGATTGGTTGGCAAAGAAGAACATTCGAGATGGATACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTTATCACATACGTGGCTTTGAACTTGATGGATGGACGTGGTCAACCAGCGTTGCTTTATATAGTCCCATCTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAACTCAAGATTTTATGGACAAGAGGGGAACCGAAAATACCTTGCCCTCACATCCAAGAGGATCAATCAACAAACCAaaatagagatgGTCTGAGGTGA 1635 0.4269 MVSLGATCAVCCVFMMLATFTLAGDIVHPDNIAPKRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKRANHTRVAIADPPNCCTKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEANETDIIIGIPAVMLPQDAGENLENHILNKSVVSVQLYSPLRPLVDVAEVFLWLMAVGTIFCASYWSAWTAREAAIEQERLVKDASDEYVNMENAGSSAYVEISTAAAISFVVIASCFLVMLYKLMASWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQDAGQTFVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNIRDGYFLWAMTAYGLGLLITYVALNLMDGRGQPALLYIVPSTLGTFLSLGKKRGELKILWTRGEPKIPCPHIQEDQSTNQNRDGLR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0716 544 Gene3D - 40 183 - -
Ssu3g0716 544 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 7 536 - -
Ssu3g0716 544 Coils Coil 218 238 - -
Ssu3g0716 544 Pfam PA domain 89 166 IPR003137 -
Ssu3g0716 544 SUPERFAMILY PA domain 98 138 IPR046450 -
Ssu3g0716 544 SMART psh_8 242 511 IPR006639 GO:0004190|GO:0016021
Ssu3g0716 544 Pfam Signal peptide peptidase 242 522 IPR007369 GO:0004190|GO:0016021
Ssu3g0716 544 PANTHER SIGNAL PEPTIDE PEPTIDASE 7 536 IPR007369 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0716 Ssu-Chr3 17260095 17273289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0716 K09597 - gmx:100808921 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0716 3 17260095 17273289 Ssu3g0716 3 17260095 17273289 ECH
Ssu3g0716 3 17260095 17273289 Ssu4g2798 4 71366209 71373993 PCT