Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2788 ATGGACAATTCATCCAACTTTGATGAAGACTCTGATGTGGGGTACCAACCTTCACCTTCTTCTGTGGATCAAAATGATCATTCAATCACTAAAACTGCTGGATTCTCCCCATTTAGCAGCGATTCCCTCGCCTATTGCCGGACTAACTCAGAGGTCTCAAACTTCTCTGAGCCTATTGATGACAATAGCTATGCAAGTGAACCTTCACCTTCTCTATGGACACCTGTGAAACATGGAGCTGGTCAAGCTGCTCTTTCAAGGTTAGGAATGAAGCAGCACAGGCACTCATTGGATGATAAATCTGATGACCTTGATCTCTTGGAGTCAGagcttGATATGATGAAGGAAAGACTTGCAAAGCTTCTATTGGGGGAGGACATGTCTGGTGGTGGGAAAGGTGTCTGCACTGCAGTTacaatatcaaattcaattacCAATCtctatgCAACTGTTTTCGGACAAAATTTAAAGCTGGAGCCTCTCAAGCCTGAGAAGAAGGCTATGTGGAAAAGAGAAATGAATTGTCTCCTATCTATGTGTGATTACATAGTAGAATTTGCCCCAACTGCACAATATTTACAAGATGGTACAATTGTGGAGATGATGACAAGCAGACCAAGATCAGATATTTATATCAACCTCCCAGCTCTGCAGAAGCTTGACACAATGCTCATCgaaATATTGGATAGTTTCCAGGAAACTGAATTTTGGTACGCTGAGCAAGGGAGCATATCAGGGAATTCAACTCGGTCACGTGCAGGCTCATTTCGAAGGATTGTTCAGAGGAAAGATGAGAAATGGTGGTTACCAGTTCCTTGTGTGAACCCTGGGGGCCTCTCTGATAAGTCAAGGAAGCACTTGACTGAGAAAAGAGACTGTGCTAATCAAATTCATAAAGCAGCCATGGCTATAAATAGCAGTGTTCTTGCAGAGATGGATATCCCAGAAACATATATGGCAAATCTCCCCAAGAGTGGAAGAACAAGTCTGGGGGACACAATTTACCGCTATATGTATTCTGCAGACAAGTTCTCTCCTAATCACCTTCTTGACTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTGGCAGATAAGGTTGAGTCTTCAATGTTCACTTGGAGGCGTAAAGCTTGTCTGAGCCATTCAAAAACATCATGGAACAAAGTCAAGGATCTCATGGCTGACACTGACCGAAGTGACAAAAACTACATCTTAGCTGAGAGAGACGAGACTTTGTTGTTTTGCTTGAAGCAAAGATATCCTGAACTTTCACAAACATCCTTGGACACAtgcaagattcaatacaaccgGGATGTAGGGAAAGCAATATTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTAGCTTGGATTGAAGATGTTCTTCATGCAGATAAATCAATGAGGAACCAAAATGTATAG 1440 0.4076 MDNSSNFDEDSDVGYQPSPSSVDQNDHSITKTAGFSPFSSDSLAYCRTNSEVSNFSEPIDDNSYASEPSPSLWTPVKHGAGQAALSRLGMKQHRHSLDDKSDDLDLLESELDMMKERLAKLLLGEDMSGGGKGVCTAVTISNSITNLYATVFGQNLKLEPLKPEKKAMWKREMNCLLSMCDYIVEFAPTAQYLQDGTIVEMMTSRPRSDIYINLPALQKLDTMLIEILDSFQETEFWYAEQGSISGNSTRSRAGSFRRIVQRKDEKWWLPVPCVNPGGLSDKSRKHLTEKRDCANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRTSLGDTIYRYMYSADKFSPNHLLDCLKISSEHEALELADKVESSMFTWRRKACLSHSKTSWNKVKDLMADTDRSDKNYILAERDETLLFCLKQRYPELSQTSLDTCKIQYNRDVGKAILESYSRVLEGLAFNIVAWIEDVLHADKSMRNQNV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2788 479 MobiDBLite consensus disorder prediction 56 77 - -
Ssu4g2788 479 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g2788 479 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 109 475 IPR005512 GO:0005085
Ssu4g2788 479 ProSiteProfiles PRONE domain profile. 101 479 IPR005512 GO:0005085
Ssu4g2788 479 Gene3D PRONE domain, subdomain 1 104 345 - -
Ssu4g2788 479 Gene3D PRONE domain, subdomain 1 346 479 - -
Ssu4g2788 479 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 324 - -
Ssu4g2788 479 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 323 479 - -
Ssu4g2788 479 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 324 IPR038937 GO:0005085
Ssu4g2788 479 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 323 479 IPR038937 GO:0005085
Ssu4g2788 479 Coils Coil 90 124 - -
Ssu4g2788 479 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2788 Ssu-Chr4 71098006 71100713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2788 - - gmx:100785956 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0722 3 17426085 17429227 Ssu4g2788 4 71098006 71100713 PCT